| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0880 |
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| Symbol | rnc |
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| ID | 4603132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1069793 |
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| End bp | 1070473 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780215 |
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| Product | ribonuclease III |
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| Protein accession | YP_926757 |
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| Protein GI | 119774017 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.199986 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGCCGA TTAAAAATCT GCCGCGACTG TGCCGGACTC TGGGCTATGA GTTCAGCGAT
ATCCGTCTGC TTGAGCAGGC ACTGACTCAC AGAAGTGCCT CAAACCAGCA TAACGAACGG
CTGGAGTTTT TGGGTGATTC CATTCTCTCC ATCGTGATAT CCGATGCGCT GTTTCATCAG
TTCCCCAAGG CCACGGAAGG TGACCTGAGC CGTATGCGCG CCACCCTAGT GCGGGGCGAT
ACCCTGGCGG TGATTGCCAA GGAATTCAAG CTGGGGGATT ACCTCAATCT GGGCCCGGGA
GAGCTCAAGA GCGGTGGTTT CCGCCGGGAG TCTATCCTGG CGGATGCGGT GGAAGCCATC
ATAGGTGCCG TCTATTTGGA TGCGGACCTT GAAACCTGCC GCAGTTTATT GCTGGGCTGG
TACGAAACCA GGCTTGCCGA CATCAAGCCC GGGGTTGGCC AAAAGGATGC CAAGACCCTG
CTTCAGGAGT ATCTGCAGGG AATGAAAAAG CCCCTGCCTG AATATCAGGT GACCCAGGTA
GAAGGTGAGG CGCACGATCA GACCTTTACC GTGGAATGCC GGGTGACCGA CCTTGCCGAT
GCCGTCGTGG GTGTTGGCAG TTCTCGCCGT AAAGCCGAAC AAATGGCGGC GGCACAAGTT
TTGGAATTAT TGAATCAATG A
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| Protein sequence | MEPIKNLPRL CRTLGYEFSD IRLLEQALTH RSASNQHNER LEFLGDSILS IVISDALFHQ
FPKATEGDLS RMRATLVRGD TLAVIAKEFK LGDYLNLGPG ELKSGGFRRE SILADAVEAI
IGAVYLDADL ETCRSLLLGW YETRLADIKP GVGQKDAKTL LQEYLQGMKK PLPEYQVTQV
EGEAHDQTFT VECRVTDLAD AVVGVGSSRR KAEQMAAAQV LELLNQ
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