Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0847 |
Symbol | |
ID | 4603099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1032488 |
End bp | 1034590 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639780182 |
Product | periplasmic component of the Tol biopolymer transport system-like protein |
Protein accession | YP_926724 |
Protein GI | 119773984 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.704427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.802494 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTGAGA CCAAACAGAG CGTATTTTAC CTCGGCAGCT GCCGTATCGA TGCGAGCGAC AACAGCCTGC AGTTTCCCGC CTCTGCCGAC TGTGTGCAGG AGCGCATCAC CCTGCAGCCC AAGTTTGTTG AAGTGCTCGC TTATCTTGCT CATCACTATC CCAGGGTGGT GACGAGGGAT GCGCTGATCA CTGACATCTG GGAAGGGAAT ACCTACGTGG GCGAGAAGGC GCTCACCAAC GCAGTGTGGC ACCTGAGGCA GCAACTCGGA CCGCTTGGCG CGGGAGAGGT CATAGAAACA GTCCGTAAAA CCGGGTACCG GCTTTGTATC GAACCCAGAT TCGAGCTACC TGCCGAAGAT GGACAATTGC GCCTTGAGCG TAAGAGTCGG CTCCTTGGCC GGGCTCTAAT CGGGTGCTCA GTGACGCTTG CATTGGTATT GGCCGTGGCA GGCCACCATT GGTACCGGGA CACGCTGCAC CGCCCCTTTG GGGTCGACAG GCTCACCAGC GATGGCGGCT CAGAGCGTTT CCCCAGTGTG TCCCCCGATG GGCGCTTTTT GGTGTATGGC GGCCAGCAGC CCGGTAAAAA CGGCAGCTTG TTTCAGCTGG ATTTGGAGCA TCCCGATGCC AGTCCAAGAC AGCTCACCCC CGACAGTTCC GATGAGCTGC GCGCCGTCTG GTCTAACGAC GGCAAGTCGT TGTATTTCCC CAGTGCTTCT GCCGGGGAGT GCAAAATAAC CCGGCTGGAT CTGAAAGATG GTCAGCTCAC TCCCCTTGCC GACTGCACCA GCGTCACTAC GGCCATCGAC CTTACCGTTG ATGGCACTGG CCTGGCGTTT ATCACCACCA ATGCCCCACA AAAGAATGCA GGCATATACC TGCTGGATTT GACCGAGAAA GAGGCTGAGC CGGTGCGCCT GTCCTGTGAC ACAGAGTGCC CCTACCGCGA CAGAGATTTT GCCTTCAGTC CCGATGGACA AACTCTGGCC ATCGCCAGGC GTTTTGGCGA TATATCGGAA GACATTTTTT TACGCCAGCT TGCCGACGGC AGTGAGCGGC GACTGACTCA GGGGATTGAA GATATACGCG GTCTGTCCTG GCACAGAGAC GGGCGGCGTC TGGTATACAG CACCGAAGAG GCGGGTAACC GTGGCGGCTA TCTTATCGAT ACCGAAACCG GCGAAATCAC GGCACTGGAT CAGGATGGTT TAAGCTACCC CCGCTTTGTG CCCGATTCCG ACGAGCTGGT GTTCTATCAC TACAATAATC ATCGCCAGCT GGTGTCGATG CATCCATTTG CCGAGGTGCC CCAGGCTCCG TTTCCGATGA TTTACGGCAA CTTCAGCCAA CGTTATGCGG ATTATTCACC CGAGGCCCGG CGCTTGGTGT TTGTGTCCAA TGAGTCAGAG CACAATGAAA TCTGGACATC GGACGTGGAC GGGCAGCGGC GGCAAATGCA CACCTCGCTG AAACGTCAGG CCACTTCGCC CGCCTGGTCA CACGACGGCA GTCGTATCGC CTTTGTGGCC GCGGATACCA ATCACGAGGG TAACAAGCTG CATATTCTGG ATATTCGCGA CAACAGCATC CGGGTTGTGG CGTCGCCTTA TATCAACCAT GGCCGTCCCG AGTGGAGTGG TGACGACAGC TTTTTGCTGG CCAGCACTGT GGATGGTTTG ACCCGCTTCC ATCTGGACAA CAAACCTCCA ACTCTGGTGT CTCCCATTAT GGTGCGGCGT CTTCAGGTGT TGGGGGATTG GCTCTACTTC AGCTACAGCA CCGGGCCACG TGGTCTTTGG CGCATGCCAT GGCAAGGCGG AAAGCCGGAG CAGGTGCTGG GGGCGAAGTT GATGAGTGAT GGCTATAACT GGACAGTAGC GGATGACGGT GTCTTCTTCC GCCAGCGCCA TTCGGGCTCG GCATTGCTCA GCTATTTTGA CTTCGCCAGG GCAGAGGTCA GGCCGCTGAT TGAGTTGCCC CCCAACAGCA TCAGCCGTCA GGAGAACATG GTGTGGGTAG AAAAAGAGCA AAAGCTGGTA CTGGTGTCGT GGAACTATCC GAGGCGTGAC GTGATGCGAT TGAGGCATCC TGCGCTGCAA TGA
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Protein sequence | MLETKQSVFY LGSCRIDASD NSLQFPASAD CVQERITLQP KFVEVLAYLA HHYPRVVTRD ALITDIWEGN TYVGEKALTN AVWHLRQQLG PLGAGEVIET VRKTGYRLCI EPRFELPAED GQLRLERKSR LLGRALIGCS VTLALVLAVA GHHWYRDTLH RPFGVDRLTS DGGSERFPSV SPDGRFLVYG GQQPGKNGSL FQLDLEHPDA SPRQLTPDSS DELRAVWSND GKSLYFPSAS AGECKITRLD LKDGQLTPLA DCTSVTTAID LTVDGTGLAF ITTNAPQKNA GIYLLDLTEK EAEPVRLSCD TECPYRDRDF AFSPDGQTLA IARRFGDISE DIFLRQLADG SERRLTQGIE DIRGLSWHRD GRRLVYSTEE AGNRGGYLID TETGEITALD QDGLSYPRFV PDSDELVFYH YNNHRQLVSM HPFAEVPQAP FPMIYGNFSQ RYADYSPEAR RLVFVSNESE HNEIWTSDVD GQRRQMHTSL KRQATSPAWS HDGSRIAFVA ADTNHEGNKL HILDIRDNSI RVVASPYINH GRPEWSGDDS FLLASTVDGL TRFHLDNKPP TLVSPIMVRR LQVLGDWLYF SYSTGPRGLW RMPWQGGKPE QVLGAKLMSD GYNWTVADDG VFFRQRHSGS ALLSYFDFAR AEVRPLIELP PNSISRQENM VWVEKEQKLV LVSWNYPRRD VMRLRHPALQ
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