| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0847 |
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| Symbol | |
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| ID | 4603099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1032488 |
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| End bp | 1034590 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780182 |
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| Product | periplasmic component of the Tol biopolymer transport system-like protein |
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| Protein accession | YP_926724 |
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| Protein GI | 119773984 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.704427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.802494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGAGA CCAAACAGAG CGTATTTTAC CTCGGCAGCT GCCGTATCGA TGCGAGCGAC
AACAGCCTGC AGTTTCCCGC CTCTGCCGAC TGTGTGCAGG AGCGCATCAC CCTGCAGCCC
AAGTTTGTTG AAGTGCTCGC TTATCTTGCT CATCACTATC CCAGGGTGGT GACGAGGGAT
GCGCTGATCA CTGACATCTG GGAAGGGAAT ACCTACGTGG GCGAGAAGGC GCTCACCAAC
GCAGTGTGGC ACCTGAGGCA GCAACTCGGA CCGCTTGGCG CGGGAGAGGT CATAGAAACA
GTCCGTAAAA CCGGGTACCG GCTTTGTATC GAACCCAGAT TCGAGCTACC TGCCGAAGAT
GGACAATTGC GCCTTGAGCG TAAGAGTCGG CTCCTTGGCC GGGCTCTAAT CGGGTGCTCA
GTGACGCTTG CATTGGTATT GGCCGTGGCA GGCCACCATT GGTACCGGGA CACGCTGCAC
CGCCCCTTTG GGGTCGACAG GCTCACCAGC GATGGCGGCT CAGAGCGTTT CCCCAGTGTG
TCCCCCGATG GGCGCTTTTT GGTGTATGGC GGCCAGCAGC CCGGTAAAAA CGGCAGCTTG
TTTCAGCTGG ATTTGGAGCA TCCCGATGCC AGTCCAAGAC AGCTCACCCC CGACAGTTCC
GATGAGCTGC GCGCCGTCTG GTCTAACGAC GGCAAGTCGT TGTATTTCCC CAGTGCTTCT
GCCGGGGAGT GCAAAATAAC CCGGCTGGAT CTGAAAGATG GTCAGCTCAC TCCCCTTGCC
GACTGCACCA GCGTCACTAC GGCCATCGAC CTTACCGTTG ATGGCACTGG CCTGGCGTTT
ATCACCACCA ATGCCCCACA AAAGAATGCA GGCATATACC TGCTGGATTT GACCGAGAAA
GAGGCTGAGC CGGTGCGCCT GTCCTGTGAC ACAGAGTGCC CCTACCGCGA CAGAGATTTT
GCCTTCAGTC CCGATGGACA AACTCTGGCC ATCGCCAGGC GTTTTGGCGA TATATCGGAA
GACATTTTTT TACGCCAGCT TGCCGACGGC AGTGAGCGGC GACTGACTCA GGGGATTGAA
GATATACGCG GTCTGTCCTG GCACAGAGAC GGGCGGCGTC TGGTATACAG CACCGAAGAG
GCGGGTAACC GTGGCGGCTA TCTTATCGAT ACCGAAACCG GCGAAATCAC GGCACTGGAT
CAGGATGGTT TAAGCTACCC CCGCTTTGTG CCCGATTCCG ACGAGCTGGT GTTCTATCAC
TACAATAATC ATCGCCAGCT GGTGTCGATG CATCCATTTG CCGAGGTGCC CCAGGCTCCG
TTTCCGATGA TTTACGGCAA CTTCAGCCAA CGTTATGCGG ATTATTCACC CGAGGCCCGG
CGCTTGGTGT TTGTGTCCAA TGAGTCAGAG CACAATGAAA TCTGGACATC GGACGTGGAC
GGGCAGCGGC GGCAAATGCA CACCTCGCTG AAACGTCAGG CCACTTCGCC CGCCTGGTCA
CACGACGGCA GTCGTATCGC CTTTGTGGCC GCGGATACCA ATCACGAGGG TAACAAGCTG
CATATTCTGG ATATTCGCGA CAACAGCATC CGGGTTGTGG CGTCGCCTTA TATCAACCAT
GGCCGTCCCG AGTGGAGTGG TGACGACAGC TTTTTGCTGG CCAGCACTGT GGATGGTTTG
ACCCGCTTCC ATCTGGACAA CAAACCTCCA ACTCTGGTGT CTCCCATTAT GGTGCGGCGT
CTTCAGGTGT TGGGGGATTG GCTCTACTTC AGCTACAGCA CCGGGCCACG TGGTCTTTGG
CGCATGCCAT GGCAAGGCGG AAAGCCGGAG CAGGTGCTGG GGGCGAAGTT GATGAGTGAT
GGCTATAACT GGACAGTAGC GGATGACGGT GTCTTCTTCC GCCAGCGCCA TTCGGGCTCG
GCATTGCTCA GCTATTTTGA CTTCGCCAGG GCAGAGGTCA GGCCGCTGAT TGAGTTGCCC
CCCAACAGCA TCAGCCGTCA GGAGAACATG GTGTGGGTAG AAAAAGAGCA AAAGCTGGTA
CTGGTGTCGT GGAACTATCC GAGGCGTGAC GTGATGCGAT TGAGGCATCC TGCGCTGCAA
TGA
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| Protein sequence | MLETKQSVFY LGSCRIDASD NSLQFPASAD CVQERITLQP KFVEVLAYLA HHYPRVVTRD
ALITDIWEGN TYVGEKALTN AVWHLRQQLG PLGAGEVIET VRKTGYRLCI EPRFELPAED
GQLRLERKSR LLGRALIGCS VTLALVLAVA GHHWYRDTLH RPFGVDRLTS DGGSERFPSV
SPDGRFLVYG GQQPGKNGSL FQLDLEHPDA SPRQLTPDSS DELRAVWSND GKSLYFPSAS
AGECKITRLD LKDGQLTPLA DCTSVTTAID LTVDGTGLAF ITTNAPQKNA GIYLLDLTEK
EAEPVRLSCD TECPYRDRDF AFSPDGQTLA IARRFGDISE DIFLRQLADG SERRLTQGIE
DIRGLSWHRD GRRLVYSTEE AGNRGGYLID TETGEITALD QDGLSYPRFV PDSDELVFYH
YNNHRQLVSM HPFAEVPQAP FPMIYGNFSQ RYADYSPEAR RLVFVSNESE HNEIWTSDVD
GQRRQMHTSL KRQATSPAWS HDGSRIAFVA ADTNHEGNKL HILDIRDNSI RVVASPYINH
GRPEWSGDDS FLLASTVDGL TRFHLDNKPP TLVSPIMVRR LQVLGDWLYF SYSTGPRGLW
RMPWQGGKPE QVLGAKLMSD GYNWTVADDG VFFRQRHSGS ALLSYFDFAR AEVRPLIELP
PNSISRQENM VWVEKEQKLV LVSWNYPRRD VMRLRHPALQ
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