| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0834 |
|---|
| Symbol | |
|---|
| ID | 4603086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1016610 |
|---|
| End bp | 1017893 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780169 |
|---|
| Product | polynucleotide adenylyltransferase region |
|---|
| Protein accession | YP_926711 |
|---|
| Protein GI | 119773971 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000136333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACA CATTGAAAAC TTATCTGGTA GGCGGCGCAG TTCGGGATTC ACTCCTCGGT
CTTGACGTCA AAGACAGAGA TTATATGGTG GTTGGCGCAA CCGTAGAGGA AATGCTGGCG
GCCGGGTACC GCCAGGTTGG TAAAGACTTT CCGGTATTTT TGCACCCCAA AACCCAGGAA
GAATATGCCC TTGCCCGCAC CGAGCGAAAG AGCGGCACAG GTTACGGCGG CTTTGTCTGT
CATGCGAGCC CCGATGTCAC CCTCGAAGAA GACCTCAAGC GCCGGGATCT GACCATCAAC
GCAATCGCCA TGGCTGAGGA TGGCAGTCTG CATGACCCCT GGGGCGGCGT AGCCGACCTT
GAAGCAAGGT TGTTACGGCA TGTCTGCGAG GCTTTTGTGG AAGACCCCCT CAGGGTGCTT
CGCGTTGCCC GCTTTGCCGC CCGTTTCGCG CCTCAGGGAT TTACCGTCGC CCCTGACACC
CTGGCACTAA TGCGCCAGCT GACTGAGAGT GGTGAGCTTT TGTACCTGAC CGCAGAGCGT
GTCTGGCAGG AGCTGGAGAA GGTATTGGGC TGTGACAGTC CCCAGGTCTT TTTTGACGTG
CTAAACCAAT GTGGTGCGCT TGAGGTGCTG TTTCCGGAAA TCCATGCTTT ATTCGGTGTG
CCTCAGCCTG AACAATGGCA TCCTGAAATT GATACCGGGG TGCACACCAT GATGGTGCTG
GAGCAGGCAG CCAAACTCAC ACCCAATAAG CAAGTCAGGT TTGCTGCCCT GGTACATGAT
CTTGGCAAGG GCGTCACCCC AAAGGCACTT TGGCCCAAAC ACCATGGCCA CGGTCAAAAG
GGATTACCCC TCATCAAAGC ACTCTGTGAC AGATTTAGAG TGCCCTCGGA CTATAAAGAG
CTGGCGCTTT GGGTGAGCGA CGAACATCAG AATATTCACA ATGCGTTTGA GCTCAGGGCC
GACACTATTC TAAGACTGTT TGATAAATTG GATCTCTGGC GCAAGCCTGA ACGATTGCCT
CTGGTATTGG ATGCCTGCGA GGCCGACATT AAAGGGCGAA CCGGATTCGA AAATAACCCC
TATCCTCAGA AAAAATATTT ATTGGACTGT TATAAAGCGA CCCAAAAAAT TGACGTTCGG
GAAATAATTG ACGCGGGTTT TTCCGGGGGT GAAATCAAAC ATGAATTGGC GAAACGTCGG
CTTTCGGAAA TAGGATTGAT AAAAAACTCT GTCCAAAATC AATCAAAAGC TTCATCGGTG
AAAAAATCTG ACCTAGAAGC GTGA
|
|---|
| Protein sequence | MDNTLKTYLV GGAVRDSLLG LDVKDRDYMV VGATVEEMLA AGYRQVGKDF PVFLHPKTQE
EYALARTERK SGTGYGGFVC HASPDVTLEE DLKRRDLTIN AIAMAEDGSL HDPWGGVADL
EARLLRHVCE AFVEDPLRVL RVARFAARFA PQGFTVAPDT LALMRQLTES GELLYLTAER
VWQELEKVLG CDSPQVFFDV LNQCGALEVL FPEIHALFGV PQPEQWHPEI DTGVHTMMVL
EQAAKLTPNK QVRFAALVHD LGKGVTPKAL WPKHHGHGQK GLPLIKALCD RFRVPSDYKE
LALWVSDEHQ NIHNAFELRA DTILRLFDKL DLWRKPERLP LVLDACEADI KGRTGFENNP
YPQKKYLLDC YKATQKIDVR EIIDAGFSGG EIKHELAKRR LSEIGLIKNS VQNQSKASSV
KKSDLEA
|
|---|
| |