| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0826 |
|---|
| Symbol | rpsU |
|---|
| ID | 4603078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1011081 |
|---|
| End bp | 1011296 |
|---|
| Gene Length | 216 bp |
|---|
| Protein Length | 71 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780161 |
|---|
| Product | 30S ribosomal protein S21 |
|---|
| Protein accession | YP_926703 |
|---|
| Protein GI | 119773963 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0828] Ribosomal protein S21 |
|---|
| TIGRFAM ID | [TIGR00030] ribosomal protein S21 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000361662 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATCG TTAAAGTACG TGAAAATGAA CCATTCGACG TAGCTCTGCG TCGTTTCAAG
CGCTCTTGCG AAAAAGCAGG TATCCTGGCC GATGTGCGTG CTCGTGAATT CTACGAGAAG
CCAACTACTG CCCGTAAGCG CGCCAAGGCC GCTGCGGTTA AGCGTCTGGC CAAGAAGCTT
TCTCGCGAAA ACGCACGTCG CGTACGTTTA TACTAA
|
|---|
| Protein sequence | MPIVKVRENE PFDVALRRFK RSCEKAGILA DVRAREFYEK PTTARKRAKA AAVKRLAKKL
SRENARRVRL Y
|
|---|
| |