Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0824 |
Symbol | |
ID | 4603076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1008819 |
End bp | 1010549 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780159 |
Product | DNA primase |
Protein accession | YP_926701 |
Protein GI | 119773961 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0132507 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAATAC CTCGTGATTT CATCAATGAT CTGATAGCCA GAACGGACAT AGTCGAGCTT ATCGACCGTA AAGTGCCGCT CAAAAAAGCA GGTAAGAACT ATTCTGCCTG TTGTCCCTTC CACAGCGAAA AATCACCTTC ATTTACCGTC AGCAGAGACA AGCAGTTTTA TCACTGTTTC GGTTGTGGCG CCCATGGTAA TGCCATCGAC TTCGTGATGG AGTACGACCG GCTTAACTTT GTCGACGCCA TTGAAGACCT GGCAGGACAG CTGGGGTTGG AAGTCCCGCG GGAGCAAGGC ACTGGTCCTC GCCGCGACGA GGGACTCGCC CGGGATCTGT ATCAGCTGAT GGAAGAGGCC GCGAGGCATT ATCAGACACA ACTGCGTCAG CACGCCGACA AACAAAAAGT CGACGAGTAT CTGGCACTGC GTGGGCTGAG CAAAGAAGTC GTTGAAGACT TTGGTATCGG TTTTGCCCCC GATGGCTGGG ATGGTCTGTT GGGTCGCTAT CGTACCAACC CGGATGCCCA GGACAAGCTG CTGACCGGCG GCATGTTGAT TGAAAACGAT GGTGGCAAGC GATACGACCG CTTCCGCGAT CGTTTGATGT TTCCTATTCG CGACAGGCGC GGTCGGGTCA TAGGTTTCGG TGGCCGGGTG CTGGGTGATG GCACACCAAA ATATTTGAAT TCGCCGGAAA CGCCCATATT TCATAAGGGA CAGGAACTCT ACGGTCTCTA TGAGCTGAAG CAAAAGCATC GCGATCCAGA GCGGGTCATG ATTGTGGAAG GCTACATGGA CGTGGTGGCG TTGGCACAAT TTGGCATCGA CTACGCGGTG GCCTCTCTGG GCACCTCGAC AACCGCAGAG CAATTTCAGT TGCTGCTGCG CAGTGCCAAA GAAGTCATCT GTTGTTATGA CGGTGACAAA GCCGGTTATG AGGCTGCCTG GCGGGCAATG GAAACCGCCC TGCCGCTGCT CAAACCCGGC GACAAAGTGA CATTTTTGTT CCTCCCTCAG GGAGAAGATC CGGACTCGCA AGTCCGCAAA GAAGGCAAAG AAGCCTTTGA AATGCGCATC GATAATGCGC TGCCACTGGC CGATTATTTG TTCGACACCT TGTCGCAGAA ATACGGCACA GATAAAGGCA ACCTGGCTAA GCAGGCCATT GCTCTGATTG AAAAAATTAA AGACACGGTT CTTGCCAATC TGCTGCTGGA AAACCTTGCC CATAAACTTG GGATGAACTC CAGTGAAGAT CTCAGGAAAA AACTCGGTCT AACCAGTATG TCCACTGGTG CCAAGGCGAT GGCGAAAAAA GGACTCAAAG GACGGGGTAC ACCGCTGCGA CTGGCCATTT CACTGCTGGT GCAACACCCC GAACTGGGAC ACAAACTGCC GGTTCAGCCG GCATTGAGCC ACATTCGCAT GACGGGTATT GAGCTGCTCA TCCAACTGTT GGAGCTCACC CGGGAACAGG TGCTCTCCAC AGCCCAACTG CTCGAGTCCT ATCGTGACAG CGAGCATTGG GGGCCGTTAA CTAAACTGGC CCAGTGGGAA CACCAGATTG CCGAAGATAA TGTGGCCCAG GAATTTCGCA AAGCGCTGGT ATGGCTTAAT AATCAATACA TAGAGCAGCG CTACCAGGAG CTCAGCATTA AACCCGACTT AACCCGGGAA GAAAAGCTGC AACTCCAAAA GCTTATCGTT GTGATGAAGG GCATGAAGTA G
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Protein sequence | MAIPRDFIND LIARTDIVEL IDRKVPLKKA GKNYSACCPF HSEKSPSFTV SRDKQFYHCF GCGAHGNAID FVMEYDRLNF VDAIEDLAGQ LGLEVPREQG TGPRRDEGLA RDLYQLMEEA ARHYQTQLRQ HADKQKVDEY LALRGLSKEV VEDFGIGFAP DGWDGLLGRY RTNPDAQDKL LTGGMLIEND GGKRYDRFRD RLMFPIRDRR GRVIGFGGRV LGDGTPKYLN SPETPIFHKG QELYGLYELK QKHRDPERVM IVEGYMDVVA LAQFGIDYAV ASLGTSTTAE QFQLLLRSAK EVICCYDGDK AGYEAAWRAM ETALPLLKPG DKVTFLFLPQ GEDPDSQVRK EGKEAFEMRI DNALPLADYL FDTLSQKYGT DKGNLAKQAI ALIEKIKDTV LANLLLENLA HKLGMNSSED LRKKLGLTSM STGAKAMAKK GLKGRGTPLR LAISLLVQHP ELGHKLPVQP ALSHIRMTGI ELLIQLLELT REQVLSTAQL LESYRDSEHW GPLTKLAQWE HQIAEDNVAQ EFRKALVWLN NQYIEQRYQE LSIKPDLTRE EKLQLQKLIV VMKGMK
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