| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0752 |
|---|
| Symbol | |
|---|
| ID | 4603005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 927691 |
|---|
| End bp | 929094 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639780087 |
|---|
| Product | ATP-dependent RNA helicase DbpA |
|---|
| Protein accession | YP_926630 |
|---|
| Protein GI | 119773890 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.748703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCACTT CAGATACCCA GCCTTCACTG GCTTTTTCCA CCCTTAAGCT TAAAACCGAA
CTGCTTGAGA ACCTGTCCTC CATGGGCTAC CACGAGATGA CGCCCATTCA GGCACAGAGC
TTGCCAGCCA TTCTGGCGGG TGAGGATGTG ATTGGTCAGG GCAAAACCGG CTCGGGTAAA
ACCGCGGCCT TTGGTCTGGG GTTACTGAAT AAGCTGGATG TGAAGCGTTT TCGCATTCAA
ACCCTGGTGC TGTGCCCTAC CCGGGAACTG GCCGACCAGG TGGCGCAGGA AATCCGCACC
CTCGCCCGCG GTATCCACAA TGTAAAAGTA CTGACCCTCT GCGGCGGCGT ACCCATGGGA
CCACAGGTGG GCTCGCTGGA GCATGGCGCC CACATTATCG TTGGTACGCC GGGGCGGATT
GTCGATCACC TTGAGCGTGA CCGCCTCGAT TTGAGCAACC TCAATATGCT GGTGCTCGAT
GAAGCCGACC GCATGCTGGA AATGGGCTTT CAGCCGCAGC TCGATGCCAT TATTGCCAGA
AGCCCGAGGG AGCGTCAGAC CCTGCTGTTC AGCGCCACCT TCCCCGAGCA GATTCAAACC
ATTGCCCAGC AGGTGATGTA CAACCCTGTG ATGGTGAAAG TAGCCACAAC CCACGAAAAG
AGCACCATAG CCCAGCACTT CTACCATTTG GAAGACGACG GCGCGCGGAT GCAGGCGCTG
CAATTGTTGC TGCTCGAGCA CAAGCCCGAG AGCGCGGTGG TGTTCTGTAA CACCAAGCGC
GAAACCCAGA AGGTGGCCGA TGACCTTACT GCTGCAGGTT TCAGCGTACT GGCGCTCCAT
GGCGACCTGG AGCAACGCGA CAGAGACGAA ACCCTGCTGC AATTTGCCAA CAAGAGCGCC
TGCGTGCTGG TCGCCACCGA CGTGGCCGCC CGAGGTTTGG ATATCGACGC CCTCGATGCA
GTATTCAACT ACCACGTGGC CCACGATACC GAGGTACACA TTCACCGCAT TGGCCGCACC
GGCCGTGCGG GCAGCAAAGG GGCCGCCTAT ACCTTCTTCA ACGACAAAGA CGGCTACAAG
ATAGCCTTGC TGGAAGAGTA CCTGGAGCGC GACATTCAAA GTGAGCCACT GCCGTCAGCA
AGCCTCCTTG GCAGCATGCC TTTGGCGCCT GCCATGATCA CCCTGCAAAT CGACGGCGGC
AAAAAGGATA AGCTGCGCCC CGGCGATATT CTTGGCGCCC TCACCGGTGA CAAGGGTATT
GAAGGTGCCC AGGTGGGTAA GATTCTGGTG ACAGACTACC GTGCTTACGT AGCCGTTGAT
CGCAAGGTGG CTAAAAAGGC GCTGGGTAAA ATCACCTCCG GCCGCATTAA GGGCAAGTCT
TACCGAGCCT GGCTGATGAA GTAA
|
|---|
| Protein sequence | MSTSDTQPSL AFSTLKLKTE LLENLSSMGY HEMTPIQAQS LPAILAGEDV IGQGKTGSGK
TAAFGLGLLN KLDVKRFRIQ TLVLCPTREL ADQVAQEIRT LARGIHNVKV LTLCGGVPMG
PQVGSLEHGA HIIVGTPGRI VDHLERDRLD LSNLNMLVLD EADRMLEMGF QPQLDAIIAR
SPRERQTLLF SATFPEQIQT IAQQVMYNPV MVKVATTHEK STIAQHFYHL EDDGARMQAL
QLLLLEHKPE SAVVFCNTKR ETQKVADDLT AAGFSVLALH GDLEQRDRDE TLLQFANKSA
CVLVATDVAA RGLDIDALDA VFNYHVAHDT EVHIHRIGRT GRAGSKGAAY TFFNDKDGYK
IALLEEYLER DIQSEPLPSA SLLGSMPLAP AMITLQIDGG KKDKLRPGDI LGALTGDKGI
EGAQVGKILV TDYRAYVAVD RKVAKKALGK ITSGRIKGKS YRAWLMK
|
|---|
| |