Gene Sama_0721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0721 
Symbol 
ID4602974 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp885318 
End bp886166 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content58% 
IMG OID639780056 
Productcell shape determination protein CcmA 
Protein accessionYP_926599 
Protein GI119773859 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1664] Integral membrane protein CcmA involved in cell shape determination 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.511119 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGG GACAAGGGAT CACATTTATT GGCGCCGGAA CCCGGCTTGA AGGCGAGATG 
ATGCTGGAAA GCGCGGCCTT GGTATCGGGC GAGTTGCACG GACGGGTGAG CTCCAAAGGC
CAAATAAAGA TAGAGCAGGG TGGCCTTATC GAGGGGGAAC TCACCTGTCA TGAGCTGAAT
GTCAGCGGCA CCTTCAGGGG TAAACTCAGC TGCCAAAAAT TGACCATCAT CGCTGGTGGC
GTCGTGGAAG GTGAGGTGGC CAGTAATCAG ATGGAAATCT TCGAAGGCGG CCAGTTTATC
GGCAGTCGAA AGCGTGGCCC TGAGCCTGTT GAATTGCCTG CGGGCACAAA GGCGAGCTTG
CCAACAGAGG GCCGTAAGGG GCATTTAAAG TTGGTGCTCG GTATCGCTGC GGCGCTTGGG
CTTGGATATC TGGTGACTCA AACCGGCTTC ATTCAGGGGA TTAAAGATGG GTATCAGGCC
GGCAGTGCTG CCCGCTCGGA AATGAAAGAA CAGGCCCAGG CGCCCTCACA GGAACACCAG
AGTCAGGCAC TGATGGCGAC GGCCGCTGAC GGCGATGCAT CAGGCTTGGC AGCAGAAAAC
ATCAATGCTC AGGCCGGTGA CTACTTTGCC GAAGACACAG ACGCCATGGA AGCGGGCAAT
GCGCTGCTGC TGGAAAATGG CTTTGATGCC GGGGTGACAA AAACCGATAC GGATGGGGCA
GATGACGCTC AGCCTGCGGC GCTGGAGCCC GGTGCGCAAA GTCGCCCACT GACCCCGGAC
AGCGACACCA GTGCCCTTAA TACCCAGGGG GCGTCAGATT TGCCTGCAGC ACCCGCTAAT
CGTATGTAA
 
Protein sequence
MSKGQGITFI GAGTRLEGEM MLESAALVSG ELHGRVSSKG QIKIEQGGLI EGELTCHELN 
VSGTFRGKLS CQKLTIIAGG VVEGEVASNQ MEIFEGGQFI GSRKRGPEPV ELPAGTKASL
PTEGRKGHLK LVLGIAAALG LGYLVTQTGF IQGIKDGYQA GSAARSEMKE QAQAPSQEHQ
SQALMATAAD GDASGLAAEN INAQAGDYFA EDTDAMEAGN ALLLENGFDA GVTKTDTDGA
DDAQPAALEP GAQSRPLTPD SDTSALNTQG ASDLPAAPAN RM