| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0657 |
|---|
| Symbol | |
|---|
| ID | 4602910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 813803 |
|---|
| End bp | 814861 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639779992 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_926535 |
|---|
| Protein GI | 119773795 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000195666 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATTACC AAAATGATGA CGTTCGTATT AATGAAGTAA AAGAATTGCT GCCACCTATC
GCCATTCTCG AGCGATTTCC TGCAACAGAG AACGCATCTG CCACGGTTTT TAATGCCCGG
AGCAATATTC ACAACTTGCT GGCAAAAAAA GACGATCGCC TGCTGGTCGT GATTGGCCCC
TGTTCAATTC ACGACCCCGA AGCGGCGCTG GAATACGGTC AGCGTTTGCT TGCACTGAGA
GAACAATATA GCGACCAGCT GGAAGTGGTG ATGCGGGTGT ATTTTGAAAA GCCCAGAACC
ACGGTTGGCT GGAAAGGCTT GATAAACGAT CCCTACATGG ACAACAGCTT TAAGCTGAAT
GATGGCCTGC GCACGGCCCG CAAGTTGTTG TTGGAATTGA ACCACATGGG CATGCCGACT
GCGGGTGAAT TTCTCGATAT GATCACGCCC CAATATGTTG CTGACCTCAT GTGTTGGGGG
GCCATTGGCG CTCGCACCAC TGAGTCTCAG GTGCACAGGG AGCTGGCGTC CGGTCTCTCC
TGCCCGGTTG GGTTCAAAAA TGGCACCGAC GGCACCATCA AAATTGCCAT CGATGCCATA
GGCGCGGCGG CTGCGCCCCA CCACTTTTTG TCGGTGACCA AGTTTGGACA CTCAGCCATT
GTGTCCACCA AGGGTAATCC GGACTGCCAC ATTATTCTTC GCGGTGGTCG CGAGCCCAAT
TACAGCCGCG AGCATGTCGC CAAGATCCAG ACCGAGCTGC AAAGCGCTGG GTTGCCTGAC
AATGTGATGA TTGATTTCAG CCATGCCAAC AGCAGCAAAC AATTCACTCG CCAGATGGTT
GTCGCCGATG ATGTTGCCGG TCAGCTTGCC GATGGTAACA AAGGGATTTT CGGTGTGATG
GTTGAAAGTC ATCTGAATGA AGGTCGTCAG GAGCATATCC CGGGCGTGCC GCTGGAATAT
GGCAAAAGCG TCACAGATGC CTGCCTTGGC TGGGACGACA GCGCCAAGCT GCTCGCTACC
CTGAATCAGG CCGTGCTGGC AAGGCGCGAG CGTAGCTGA
|
|---|
| Protein sequence | MYYQNDDVRI NEVKELLPPI AILERFPATE NASATVFNAR SNIHNLLAKK DDRLLVVIGP
CSIHDPEAAL EYGQRLLALR EQYSDQLEVV MRVYFEKPRT TVGWKGLIND PYMDNSFKLN
DGLRTARKLL LELNHMGMPT AGEFLDMITP QYVADLMCWG AIGARTTESQ VHRELASGLS
CPVGFKNGTD GTIKIAIDAI GAAAAPHHFL SVTKFGHSAI VSTKGNPDCH IILRGGREPN
YSREHVAKIQ TELQSAGLPD NVMIDFSHAN SSKQFTRQMV VADDVAGQLA DGNKGIFGVM
VESHLNEGRQ EHIPGVPLEY GKSVTDACLG WDDSAKLLAT LNQAVLARRE RS
|
|---|
| |