| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0648 |
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| Symbol | nrfA |
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| ID | 4602901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 803874 |
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| End bp | 805277 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779983 |
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| Product | cytochrome c552 |
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| Protein accession | YP_926526 |
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| Protein GI | 119773786 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0169797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAAAA AGCTAACCGG AAAATCCTTT GCGCTGAGCG CATTGGTCGC CGCCAGCTTT
GTAGCTGCCG GTGCGATGGC CAGTGATAAA ACCGAGCCAC GCAATGACGT ATACAAAGAC
AAATTCAGCA AACAATATAA CAGTTGGCAC GCGACTGCCG AAAGCGAAGC TATCACAGAT
GCGCTGGAGC AGGATCCTGC ACTGGTGATT TTGTGGGCTG GTTACGGTTT TGCCAAAGAC
TACAATGCCC CCCGTGGTCA CATGTATGCT CTGACTGACG TGCGTAACAC CCTGCGTACC
GGTGCTCCAA CCTCAGCCGA AGATGGCCCG ATGCCAATGG CTTGCTGGAG CTGTAAGAGC
CCTGACGTGC CCCGTCTGAT TGAAGAACAG GGCGAATCAG GCTATTTCAC CGGTAAGTGG
GCAAAAGGCG GCGCCGAAGT GGCCAACACC ATCGGTTGCA GCGACTGTCA CGAAAAAGGC
ACCCCTAAAC TGCGCCTGTC TCGTCCTTTT GCTTCCCGCG CCATGGAAGC CATTGGTACC
CCATTCGACA AGGCTTCCAA GCAGGACAAA GAATCCATGG TGTGCGCCCA GTGCCACGTG
GAGTACTACT TCGAGAAGAC TGACGATCGC AAAGGTTTCG TGAAGTTCCC ATGGGACGGC
GGCACCACAG TGGAAAACAT GGAAGTCTAT TATGACGCCA TCCAGTTTGC CGACTGGACC
CACGCTGTGT CCAAAACCCC AATGCTGAAA GCGCAGCACC CAGGTTATGA AACCTGGAAA
CTGGGTACTC ACGGTCAAAA CAACGTGTCC TGTGTTGACT GTCACATGCC GAAAGTCACC
AATGAACAGG GCAAGAAGTT TACCGATCAC AAAGTGGGCA ACCCCTTCGA TCGTTTCGAA
GAAACTTGCG GTACCTGCCA CAGTCAGGAC AAAGAACACA TGCTGACCGT CTACAAGGAC
AACAAGTCCA AGGTGATGGA GCTCAAGTCC AAGGCTGAAG CTCAGCTGGT TGCTGCTCAC
TTCGAAGCCG GTGCTGCCTG GAAAGCCGGT GCCACCGAAG ATGAAATGAA GCCTATCCTG
ACCAACATCC GTCACGCTCA GTGGCGCTGG GACTACGCCA TTGCCTCTCA CGGCGTGTCT
GCACATGCTC CAGCTGAAGC ACTGCGTGTA CTGGGCACTG CCGTAGACAA GGCTGCCAAC
GCCCGCGTTC AACTGGCTCA GTTGCTGGCC ACCAAAGGCG TGAAGCAGCC TATCGAGCTG
CCGGACATCT CTACCAAGGC CAAAGCTCAG GCTGCTCTGG GTATGGACAT GGACAAGATG
AACGCCGATA AGGCCAAGTT CAAGCAAGAA ATGCTGCCCA AGTGGGAAGC AGACGCCAAG
GCCCGCGAAG CCACTTACAA GTAA
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| Protein sequence | MVKKLTGKSF ALSALVAASF VAAGAMASDK TEPRNDVYKD KFSKQYNSWH ATAESEAITD
ALEQDPALVI LWAGYGFAKD YNAPRGHMYA LTDVRNTLRT GAPTSAEDGP MPMACWSCKS
PDVPRLIEEQ GESGYFTGKW AKGGAEVANT IGCSDCHEKG TPKLRLSRPF ASRAMEAIGT
PFDKASKQDK ESMVCAQCHV EYYFEKTDDR KGFVKFPWDG GTTVENMEVY YDAIQFADWT
HAVSKTPMLK AQHPGYETWK LGTHGQNNVS CVDCHMPKVT NEQGKKFTDH KVGNPFDRFE
ETCGTCHSQD KEHMLTVYKD NKSKVMELKS KAEAQLVAAH FEAGAAWKAG ATEDEMKPIL
TNIRHAQWRW DYAIASHGVS AHAPAEALRV LGTAVDKAAN ARVQLAQLLA TKGVKQPIEL
PDISTKAKAQ AALGMDMDKM NADKAKFKQE MLPKWEADAK AREATYK
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