Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0606 |
Symbol | |
ID | 4602859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 758042 |
End bp | 758719 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639779941 |
Product | pseudouridylate synthase |
Protein accession | YP_926484 |
Protein GI | 119773744 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.134681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGACG ACTTCAGCTA CAATCCCCCC ACAGACCCCT GGCTGGACAT ATTGCATCAG GACAAGGACA TCATAGTGAT CAATAAACCC AGCGGTTTAT TGTCGGTACC AGGCCGGGAT CCCATCCACC ATGACAGCGC CTGGAGCCGT ATCAAAGCCG AACATCCCAA TAGTCAGGTG GTCCACAGAC TGGATATGGC GACCTCCGGG GTAATGGTCT ACGCGCTGCG AAAGAGTGCC GAGGTCGAAC TGAAACGCCA ATTTCGCGAC CGCGAAACCC ACAAAACCTA CTTTGCCCGG GTGGCTGGTC ATGTCAAAGC TAATTGCAGC GTGGATTTAC CACTGATTTG CGACTGGCCA AACAGGCCAA GGCAAAAAGT AGACCATGAG ATTGGCAAAC CCTCCCTGAC CCATGTCGAC GTAATCAGTT ACGGCAAACG TTCCACCCTG GTTAAACTGA CACCTATCAC CGGCCGCAGC CATCAACTAA GAGTGCATAT GATGGCCCTG GGGCATCCTA TTCTCGGTGA TGGCTTTTAC GCCGACCCAC TGGCCAAGAG TCTTGCCGAT CGCTTGCTGC TTCATGCTGC GAGTCTCAGC TTTACCCATC CTTACAGTGG TGAGGCCATG ACCTTCAGTA CAGAAGTCCC CTTCGCAGAG GCGACGGCTA ATCAGTAA
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Protein sequence | MMDDFSYNPP TDPWLDILHQ DKDIIVINKP SGLLSVPGRD PIHHDSAWSR IKAEHPNSQV VHRLDMATSG VMVYALRKSA EVELKRQFRD RETHKTYFAR VAGHVKANCS VDLPLICDWP NRPRQKVDHE IGKPSLTHVD VISYGKRSTL VKLTPITGRS HQLRVHMMAL GHPILGDGFY ADPLAKSLAD RLLLHAASLS FTHPYSGEAM TFSTEVPFAE ATANQ
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