Gene Sama_0606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0606 
Symbol 
ID4602859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp758042 
End bp758719 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content54% 
IMG OID639779941 
Productpseudouridylate synthase 
Protein accessionYP_926484 
Protein GI119773744 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.134681 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGACG ACTTCAGCTA CAATCCCCCC ACAGACCCCT GGCTGGACAT ATTGCATCAG 
GACAAGGACA TCATAGTGAT CAATAAACCC AGCGGTTTAT TGTCGGTACC AGGCCGGGAT
CCCATCCACC ATGACAGCGC CTGGAGCCGT ATCAAAGCCG AACATCCCAA TAGTCAGGTG
GTCCACAGAC TGGATATGGC GACCTCCGGG GTAATGGTCT ACGCGCTGCG AAAGAGTGCC
GAGGTCGAAC TGAAACGCCA ATTTCGCGAC CGCGAAACCC ACAAAACCTA CTTTGCCCGG
GTGGCTGGTC ATGTCAAAGC TAATTGCAGC GTGGATTTAC CACTGATTTG CGACTGGCCA
AACAGGCCAA GGCAAAAAGT AGACCATGAG ATTGGCAAAC CCTCCCTGAC CCATGTCGAC
GTAATCAGTT ACGGCAAACG TTCCACCCTG GTTAAACTGA CACCTATCAC CGGCCGCAGC
CATCAACTAA GAGTGCATAT GATGGCCCTG GGGCATCCTA TTCTCGGTGA TGGCTTTTAC
GCCGACCCAC TGGCCAAGAG TCTTGCCGAT CGCTTGCTGC TTCATGCTGC GAGTCTCAGC
TTTACCCATC CTTACAGTGG TGAGGCCATG ACCTTCAGTA CAGAAGTCCC CTTCGCAGAG
GCGACGGCTA ATCAGTAA
 
Protein sequence
MMDDFSYNPP TDPWLDILHQ DKDIIVINKP SGLLSVPGRD PIHHDSAWSR IKAEHPNSQV 
VHRLDMATSG VMVYALRKSA EVELKRQFRD RETHKTYFAR VAGHVKANCS VDLPLICDWP
NRPRQKVDHE IGKPSLTHVD VISYGKRSTL VKLTPITGRS HQLRVHMMAL GHPILGDGFY
ADPLAKSLAD RLLLHAASLS FTHPYSGEAM TFSTEVPFAE ATANQ