Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0587 |
Symbol | |
ID | 4602840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 733548 |
End bp | 734306 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639779922 |
Product | PepSY-associated TM helix |
Protein accession | YP_926465 |
Protein GI | 119773725 |
COG category | [S] Function unknown |
COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.191213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000115238 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACTCGAC GCCCTTCAAA TACAGCCGGT AAACAACTCG GCCACCGGCT GCGCAAACAA ATCCGCCCCT GGCACAGACG CATCGGCATT ATCGGTGGCC TGTTTTTGTT ATTTCTGACA GTAACCGGCG TACTGATAAA CCACGCCGAC GACGCAGGGC TTGGACACGC CAAGGTGCGT TTGCCCTGGT TATTGGATTA TTACGGTATC CAGCTCCCTT CCCACAGCGC GCAATTTGGC GACTATGGCA TCACGGATAA TTTGCTGTGG CACCAAGGCA CTATGGTGCT GGAAGCCAAA CACTCCCTCA TCGCCGCAAC CCAATGGCGC AATCAAACCA TCGCCATCGA TGCCGAAAAC CTGTATCTGC TCAACGCTGA TGGCCAGTTG GTAGAAACCC AGAATAAAGC CACGGGGCTA CCGTCCCCCC TCAAGGCCAT GGCCATCGAA GGAGAATCTC ATTTGTGGCT GAGCGGCGAC AATGGGCAAT ATCTCGCGGA TGAAGATCTG ATTGAGTGGC AACCCGCCAC CTCATTTGCA CCATTGCATT GGCTTGAAGG CGAGGCGGCT GAACAACAGT TACTGGAAGA TGCCCGCAGC GCACACCTGC ACTGGGAACG GGTATTGCTC GACCTGCATG CAGGCCGGAT ATTCGGTCAA TGGGGCGTCT GGCTTTGGGA TCTGCTCGCC CTTGGCTTTG TATTTTTGTC TTTGAGCGGT CTCTACATCT GGATAAGCCA GCAACCCAAA CGCAAATAA
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Protein sequence | MTRRPSNTAG KQLGHRLRKQ IRPWHRRIGI IGGLFLLFLT VTGVLINHAD DAGLGHAKVR LPWLLDYYGI QLPSHSAQFG DYGITDNLLW HQGTMVLEAK HSLIAATQWR NQTIAIDAEN LYLLNADGQL VETQNKATGL PSPLKAMAIE GESHLWLSGD NGQYLADEDL IEWQPATSFA PLHWLEGEAA EQQLLEDARS AHLHWERVLL DLHAGRIFGQ WGVWLWDLLA LGFVFLSLSG LYIWISQQPK RK
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