| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0583 |
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| Symbol | |
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| ID | 4602836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 727391 |
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| End bp | 728977 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639779918 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_926461 |
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| Protein GI | 119773721 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00179643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00349282 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGATCCCTA ATCGCCAGAA GCTTTATGTC AAAGTTGCTG TTGCCATCGC GGTGGGAGCC
TTTCTCGCGG CAGTGGTCGC CTGCCTCTAT TTTTTCTGGG ATGCGCGGGA AACCAAACTC
AGGGAAGTCA AAAACCAACT TGGACAAATT GCCTTAACGG TGCAAAAAAC TGCCTCAGTT
GCCCTCTATG TCAAGGACGT GGAGCTGGGT AAAGAAATCG TTGAGGGTCT TGAGGTCAAT
GATCTGGTGG CCGGCGCTTT GCTCACCGCA GACAGCGGTG ACTGGGTGAG TTCCAGCGGT
TTTGCCGCAG ATGACTTACT GCAGGTGCTG GAATTTGACA TTCCCCATCC TTTTTTTGCC
GGTGAGGTGC TGGGCAAGCT CAAGTTGCTG CCAAACAACG AATACATTCA ATCAAGGGCC
ACTGAGGTTG CACTCAAACA AGCTTGGATG TTGGTGCTTC AATCGGCATT GATTGCACTG
CTTGTTTCCC TGTTGGTGCA TAAAACCCTG ACAGCGCCGT TAAATCGCCT GACCTCGAAC
TTTGAGAATA TTAAGCCCGG TGACAATGAC CCGCTCAACG TGCCCAAATA CCATGCTCAG
GACGAAATAG GCAGCCTGGT GCGGGGTATC AATCAGCTGG TGGCCAACCT GAATCAATCT
ATCGAAAAAG AGCGGAGCTT GCGGCAAAGG ACAGAGCTGT TGGAGCGTAA ATTCCGGCTC
ATTTTTGAAA GGGCTACCGC CGGTATTTGC CTGATAGACC CCGGCAATCA TGTGCTCGTT
GCCAACGAGG CATTCCAGCG TCTGTGTGGC ACTGAATCCA TAGATAACCA ACCAGCCCTC
AGCCACTGGT TTGAAGAAGA AGCCGAATTA GCGCGTTTTT TCGATGAACT CAGGGGGAAT
GCAAATCTCA ATCACGTTGA GATGGAGCTG CAGCTGCGCA GTCAGCAAAG CGCGCAGCTC
AAATGGGTTC ACTGCCTGTT TTCCAAAGTG GAAGACCGCA CTCAGACGCT AATTGAAGTG
ATGATGTATG ACATCACTGA ACGCACATAC AGGGAACGGA TGATTCGGTT TGAAGCCGAG
CATGACCCCT TGACCCAGCT TAAGAATCGC CGCTCAGGTG AACGCCTGTT GGTTGATATG
ATGCGAAAAG TCGATCAAAC CAGGACACTG ATGGGCGTGC TGCTGATTGA TTTGGATAAA
TTCAAACCTG TGAATGATAT CTACGGTCAT GAAGCCGGTG ATTCGGTATT GAAAACCGTC
GCCGAACGCC TTGTGAAGCT GGTCGGCGAT GGAATTGCTA TCCGTTGGGG CGGCGATGAG
TTTCTGATTG GCATTACCGA CGTTGATGAG GATTACAACA AGCTGCGTCT ACTTGCCCAG
GAAATATTGG TTCAGGTATC CAGGCCGATA GCTATTCGCG GCAGTCTTTC CTGCGAAGTG
GACGCCAGTG TGGGGATTGC CATTTATCCC CACCACGGCC ATACCCTGGA GGCGCTGCTT
GAGGCCGCAG ACGTTGCCAT GTATGAGGTC AAAGAGCAGG GGCGGGGGAG TTTTCGTATT
GGCAGGATTT CTTCCGGTGC TGCCTGA
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| Protein sequence | MIPNRQKLYV KVAVAIAVGA FLAAVVACLY FFWDARETKL REVKNQLGQI ALTVQKTASV
ALYVKDVELG KEIVEGLEVN DLVAGALLTA DSGDWVSSSG FAADDLLQVL EFDIPHPFFA
GEVLGKLKLL PNNEYIQSRA TEVALKQAWM LVLQSALIAL LVSLLVHKTL TAPLNRLTSN
FENIKPGDND PLNVPKYHAQ DEIGSLVRGI NQLVANLNQS IEKERSLRQR TELLERKFRL
IFERATAGIC LIDPGNHVLV ANEAFQRLCG TESIDNQPAL SHWFEEEAEL ARFFDELRGN
ANLNHVEMEL QLRSQQSAQL KWVHCLFSKV EDRTQTLIEV MMYDITERTY RERMIRFEAE
HDPLTQLKNR RSGERLLVDM MRKVDQTRTL MGVLLIDLDK FKPVNDIYGH EAGDSVLKTV
AERLVKLVGD GIAIRWGGDE FLIGITDVDE DYNKLRLLAQ EILVQVSRPI AIRGSLSCEV
DASVGIAIYP HHGHTLEALL EAADVAMYEV KEQGRGSFRI GRISSGAA
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