| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0575 |
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| Symbol | |
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| ID | 4602828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 716297 |
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| End bp | 717028 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779910 |
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| Product | 16S ribosomal RNA methyltransferase RsmE |
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| Protein accession | YP_926453 |
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| Protein GI | 119773713 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000011142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.211294 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAATTC CAAGAATTTT CCAGCCACTT GACCTGTCTC CCTCAGCGGA GTTTGCCCTC
GATGAAGATG GCTTTGCCCA CGTCGGCCGG GTGCTTCGCA TGGGTGAAGG CGAACAGATC
AGGGTATTCA ATGGCGATGG TAAAGATTAC CTGGCTGACA TAGTCTCGGC AGGTAAAAAG
TCACTGACGG TGAAGGTTGT TGCGGTAGAA GACAACCAGA GTGAATCGCC GCTGCATTTG
CATCTGGGCC AGGTAATCTC CCGTGGTGAC CGTATGGATT TCACCCTGCA AAAATCAGTC
GAACTCGGTG TGAACACCAT CACGCCGCTT TTTTCAGAAC GCTGCGGCGT CAAGCTCAGC
GGTGAGCGGC TCGATAAAAA AATTGCCCAA TGGCAAAAAA TCGTGATCAG CGCCTGTGAA
CAATGTGGCC GGGCCACAGT ACCCGTTGTT CGCCCTGTAA TGGATCTGGC CGAGTGGTGC
GCCGAACAAA CCAGCGCGCT CAAGTTAAAT CTTCATCCCC GTGCTGACCA TGGTATCAAT
GGTCTGGTGC TGGATAATCC CAGAGTAAGG CTGCTTATTG GCCCCGAGGG AGGGCTGTCG
GCAGAAGAGA TTGCCATGAC AGAAACCCAC AAATTTACCG AAGTGTTGCT CGGTCCCCGG
GTACTTCGTA CTGAAACGGC CGCGCTAACC GCCATTACGG CACTGCAAAT GAAATTTGGC
GATCTGGGTT AA
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| Protein sequence | MRIPRIFQPL DLSPSAEFAL DEDGFAHVGR VLRMGEGEQI RVFNGDGKDY LADIVSAGKK
SLTVKVVAVE DNQSESPLHL HLGQVISRGD RMDFTLQKSV ELGVNTITPL FSERCGVKLS
GERLDKKIAQ WQKIVISACE QCGRATVPVV RPVMDLAEWC AEQTSALKLN LHPRADHGIN
GLVLDNPRVR LLIGPEGGLS AEEIAMTETH KFTEVLLGPR VLRTETAALT AITALQMKFG
DLG
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