| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0545 |
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| Symbol | |
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| ID | 4602800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 670954 |
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| End bp | 672021 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779881 |
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| Product | outer membrane porin, putative |
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| Protein accession | YP_926425 |
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| Protein GI | 119773685 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00179021 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00341076 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAT CCCTGATCGC ATCGGCCGTT GCCACGGGTG CCGCCCTGTC TTCATTCGCC
ACCCTGGCTG ATGGCCCTGC GTTTTATGGC CGTGTTGACC TGGCAGCCAC CAATTCCAAT
ACAGGTTACG CCACCCAAAA CCAAAAAGAC GGCACTGTAT TTGAAAACAA TTTCTCCTGG
CTCGGCGTCA AAGGCAGTGA AAAGCTGAGC CAAAACGTCG CCCTGATTTA TCAAATGGAG
TTTGGCGTAA ATAACTTCGA TAACTCAGGC GACACTTTTA ATACCCGTAA CACCTTCGTG
GGCCTGCAAA CTCAGGCGGG TACCGCGTTA ATTGGCCGTA ACGACAGCGT ATTCAAACAG
TCAGAGGGAG GCTTCGACCT GTTTGGCAAC ACCAATGCGG ATATCGATCT GCTGGTGGCA
GGGCAGAGCC GTCTTGGTGA CAGCATCACC TACTACTCCC CCAAAATCGC TCATATTCTC
ACTCTGAACG CCACCTACGT CATGGAAGAT AACTATGAAG AAGGTAGCTG GTTCAACCCC
GGTGAAGACG ATGAGTGGAG CGGTAACACC TATGCCCTGT CGGCCACCCT GGGTGACAAG
GCCCTGAAGG CCCAAAACTA CTATGTTGCT GCTGCATACA ATGATGGCCT GGATGGCATT
AAAGCCTACC GCGGCGTGGC ACAGGTTAAA TTCGGGGAGT TGGTACTGGG CGCGCTCTAC
CAAAACTCGG AGCATGTGGC AGATAAGTAC AGCAATCTGG AAGGTGACAC CTGGTTTATC
AACGCCGGTT ACAAGCTGGG TAACACCACC CTGAAGGCCA GCTACGGCCA GGACGATTCA
GGTTTGGGTA AGTATGTCGG TCGCATGGTG GGAGATTCTG ACGTTGGCAT GGAACAGGTC
GAAAACGTCG ATTTGCAGCA ATACACCCTG GGTGCCGATC ATCGTCTAAG CAAAAATACT
TTGGTTTATG GTCATTTCAC CCGATTTGAC GGGGATATGT TACTTGGTGG TAACAAGGTC
TCCCTGGAAG ACGACGTGAT CACCCTGGGG TTGCGGGTAG ACTTCTAA
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| Protein sequence | MKKSLIASAV ATGAALSSFA TLADGPAFYG RVDLAATNSN TGYATQNQKD GTVFENNFSW
LGVKGSEKLS QNVALIYQME FGVNNFDNSG DTFNTRNTFV GLQTQAGTAL IGRNDSVFKQ
SEGGFDLFGN TNADIDLLVA GQSRLGDSIT YYSPKIAHIL TLNATYVMED NYEEGSWFNP
GEDDEWSGNT YALSATLGDK ALKAQNYYVA AAYNDGLDGI KAYRGVAQVK FGELVLGALY
QNSEHVADKY SNLEGDTWFI NAGYKLGNTT LKASYGQDDS GLGKYVGRMV GDSDVGMEQV
ENVDLQQYTL GADHRLSKNT LVYGHFTRFD GDMLLGGNKV SLEDDVITLG LRVDF
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