| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0521 |
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| Symbol | |
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| ID | 4602776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 640698 |
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| End bp | 642974 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779857 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_926401 |
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| Protein GI | 119773661 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.466347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.153456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA ACACGATTAA AATGAGTTGC ATTGCTTTAG CTATCTCATC TGCATTGGCA
GCACAATATG CCGTTGCCGA AGATGAAAAT AGCGCAGGGG AGAAGCAAGC CACCTTGGAA
CGCATTGAGG TTTCCGCGCG CAAAACCGTG GAAAGTCTGC AGAATGTCCC CGTTGCCGTG
ACCTCGGTCA GCGCCGCCGA TCTGGCCGAA AACGGTATCA GTGTGATGAC CGAAATTCAG
CAGTTTTCCC CCAACACCAC CTTGCAGGCA AGCCGGGGCA CCAATTCAAC GCTGACTGCT
TTTATTCGTG GTGTGGGCCA GGAAGACCCA CTCTGGGGCT ATGAGCCCGG TGTTGGTATC
TATATTGATG ATGTGTATGT TGCCCGCCCT CAGGGGGCAG TGTTGGATAT CCTTGATGTA
CAGCGTATTG AAGTGCTGCG CGGCCCGCAG GGCACCCTCT ATGGTAAAAA CACCATTGGC
GGCGCGGTGA AGTACGTGAC CAGGAAGATG AGCGGTGATG CCGAGCTGAG CCTTAACGCC
ACCGTCGGCA GCTACGCACA GCGTGATTTC AAGGTCGCCG GTCAGTACCC CTTGGTTGAC
GATAAACTCT ATTTTGGTTT TGCGGTGGCC AGTTTAAGCC GCGATGGCTA CGGTGACTTT
GTTACCTCGG CACTGAACAA TCAAGATGCT GAAAACTATA ATAAAGATCT GATGGCTGGC
CGCATCAGCC TGGAATATAC CCCTACAGAT GCACTCTTTA TGCGTCTGAC CTATGACAAA
ACTGAGGACG ATTCCAACGC CAAAGGGGGC TATCGTGTTC TGCCCAGCTT GCTCACCGAT
GCGCCTGTGC CCGACAGCAA GTACGACTCC TATACCAGCA TGCCCACCTG GAACAAGGTG
GAAACCGAAG GTTGGGGACT GACGCTGGAG TATGGTCTGA ATGACGACTG GACCCTCAAG
TCAGTGACCT CATCCCGTGA GAGCTACTCG CCCACCAACA TCGACTTTGA CAACACCAGC
CTGCGTATCT TCGACGTGCC CGCCATTTAT GACGACGAGC AGTTCAGTCA GGAGTTTCAG
GCAAACTTTA ATGGTGAAAA TCTTAAGCTG GTGTCAGGCC TGTATTACTT TAAAGGCGAC
TCCTGCGGCG TGTTTGATGC CATTCTCGAA GAGGCTTTCA AGGTATATGG TGGCCTGACC
CGAGAAGTCA GTGGCTGCAA CAACAGCGAA AGCTATGCCG CCTATGCTCA GGGCTCATAC
GATATCACCG ACAAGTTGTC ACTCACCCTG GGTGCCCGTT ACACCCGCGA GACCAAGGAT
GCCACCGTTT ACAACGGGAT TATTTTCGAC AGCATTTATC CAGAGACGGG TTGGTACCCG
GGCTATGTGC GTGACGAGGC ACAGATTCAA GCCAGTATCC CCAAGGTACT CGACGATGAA
GAAACCTGGT CGAGATTTAC TCCCAGGGTT GGGGTCGAGT ACCAGCTGAA CGACGATATG
ATGTTCTACG CCAGTTATTC TCAGGGCTTC AAGTCGGGTA CCTTTAATCC AAGGGCAACC
GGCCCAGAGC CGGCAGTTGA TCCAGAAGTG GTTGATTCAT TTGAAGTGGG CGTGAAAAGC
GAGTGGAACA ATAATCTGCG CATCAACGCC ACGGCGTTTT ACCTGAACCA TAAAGATCGT
CAGTTCGTGA CCGTATTACC CGGTGAAGAT GCGGCTGACC TCAATCAGCG TCTGGGCAAC
ATTGGTACCT CCACTGCATC GGGTCTGGAG CTTGAACTGG AATATGCGGC CACCGAATCA
CTGCACCTGT TCGCCAGCCT GGGTCTTATC GATGCCAGCT TCGATGAAGT AATTTCTTAT
GATGCTGATG GAAATCAAAT CGATATCAGT GACACCTACA CCATCACCAA CACCCCGGAT
ACCACGGCCA ATGTGGGCTT CAGCTACAAC ATTGACACGG ATTTTGGCAG CTTTGTGGCC
AACGGAAACT ACTACTACCG CAGCGACTAT GACCTGGCGG TGGTGGATAA CCTCCTGAGT
CAGGACGGTT ATGGCCTGCT GAATCTGGGT CTGAATTGGT ACAGCAACGA TGGTCACTGG
ACTGCCGGAT TACACTGGAA AAACATCACC GATGAAGAAT ACATGGTGGG TAACTATGCC
TTCGTAACGC CGGATGGTAA CGGTGGCTAT ATTCCGGGGT TGGGTGGTGA CAATACATTA
ATTGGCTATT ACGGCGATCC GGAAACCATT TCACTCACCT TAGGATACAG TTTCTAG
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| Protein sequence | MKQNTIKMSC IALAISSALA AQYAVAEDEN SAGEKQATLE RIEVSARKTV ESLQNVPVAV
TSVSAADLAE NGISVMTEIQ QFSPNTTLQA SRGTNSTLTA FIRGVGQEDP LWGYEPGVGI
YIDDVYVARP QGAVLDILDV QRIEVLRGPQ GTLYGKNTIG GAVKYVTRKM SGDAELSLNA
TVGSYAQRDF KVAGQYPLVD DKLYFGFAVA SLSRDGYGDF VTSALNNQDA ENYNKDLMAG
RISLEYTPTD ALFMRLTYDK TEDDSNAKGG YRVLPSLLTD APVPDSKYDS YTSMPTWNKV
ETEGWGLTLE YGLNDDWTLK SVTSSRESYS PTNIDFDNTS LRIFDVPAIY DDEQFSQEFQ
ANFNGENLKL VSGLYYFKGD SCGVFDAILE EAFKVYGGLT REVSGCNNSE SYAAYAQGSY
DITDKLSLTL GARYTRETKD ATVYNGIIFD SIYPETGWYP GYVRDEAQIQ ASIPKVLDDE
ETWSRFTPRV GVEYQLNDDM MFYASYSQGF KSGTFNPRAT GPEPAVDPEV VDSFEVGVKS
EWNNNLRINA TAFYLNHKDR QFVTVLPGED AADLNQRLGN IGTSTASGLE LELEYAATES
LHLFASLGLI DASFDEVISY DADGNQIDIS DTYTITNTPD TTANVGFSYN IDTDFGSFVA
NGNYYYRSDY DLAVVDNLLS QDGYGLLNLG LNWYSNDGHW TAGLHWKNIT DEEYMVGNYA
FVTPDGNGGY IPGLGGDNTL IGYYGDPETI SLTLGYSF
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