| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0512 |
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| Symbol | |
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| ID | 4602767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 628459 |
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| End bp | 630372 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639779848 |
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| Product | ATP-dependent RNA helicase DeaD |
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| Protein accession | YP_926392 |
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| Protein GI | 119773652 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.782929 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCCA ATGAAAAGAC TTTCCGCGAA CTCGGTCTGA CTGAGTCTGT TTTGCGTGCC
CTCGACGAGC TGGGTTATGA AACCCCTACG CCCATCCAGG CCGCCAGTAT CCAACCTCTG
ATGTCCGGCC AGGACATCCT GGGTCAGGCA CAAACAGGTA CGGGTAAAAC CGGTGCCTTT
GCACTGCCAC TGCTTTGCAG CGTCGATGCC AACCTCAATG CACCACAAAT TCTGGTGCTG
GCCCCTACCC GCGAACTCGC GGTACAGGTC GCCGAAGCCT TCACCAGCTA TGCCAAACAC
ATGAAGGGTT TCCACGTACT GCCTATCTAC GGTGGCCAGA GCATGTATCA GCAGCTCCAG
GCCCTGCGCC GTGGTCCACA GGTAGTTGTG GGCACACCAG GCCGTGTTAT GGACCACATG
CGTCGTGGCA CCCTGAAGCT CGACACCTTG AAGGCTCTGG TACTCGACGA AGCCGATGAA
ATGCTGAAAA TGGGCTTCAT CGACGATATC GAGTGGATCC TCGAGCACAC TCCAGAGAGC
CGCCAGCTGG CCCTGTTCTC GGCCACCATG CCTGAGCAGA TCAAGCGCGT TGCCAACAAG
CACCTGCGCA ATCCAGTGAA CATCAGCATC GCCGCCAGCC ACACCACAGT GGAATCCATC
GAGCAACGTT TTGTGCAGGT GTCCCAGCAC AATAAACTCG AGGCACTGGT ACGGGTACTG
GAAGTGGAAA ACACTGAAGG TATCATCATC TTCGTGCGTA CCCGTAACTC CTGTATGGAA
CTGGCCGAAA AGCTGGAAGC CCGTGGCTAT GCCGCATCGC CACTGCACGG CGATATGAAC
CAGCAGGCCC GTGAGCGCGC CGTTGATCAA CTGAAATCCG GCAAGCTGGA TATTCTGATC
GCCACCGATG TGGCCGCCCG TGGTCTGGAC GTTGAGCGTA TCGGCCACGT AGTAAACTAC
GATATTCCTT ACGATACAGA AGCTTACGTG CACCGTATCG GCCGTACCGG CCGCGCGGGT
CGTACCGGTA TGGCAATTCT GTTTGTGACC AGCCGTGAAA TGCGCATGCT TCGCACCATC
GAGCGCGCCA CCAACAGCCG TATCTCTCCA ATGAAGATCC CAAGCCCAGA GTCTGTGGCC
GAGCGTCGTC TGTCTCGCTT GGGTGAGCAG GTTGCCGACA TCCTCGCCAA CGAGCATCTG
GACTTTATGA AAGGCGCCGT GGCTCAGCTG TGTCAGCAGC TGGAAGTGGA TACCGAGCAA
CTGGCCGCGG CCCTGTTGCA TCAGGTGCAG TTGGAGCGTC CATTGCAGCT GCCTGCCATG
CACGAGCGTC AGCGTGACAA CTTCGACGAG CGCACCGGCC GTGGCCAGAA CGATCGCGCC
GAACGTGGTG ACCGTAACGA GCGTCGCCGT GACTCACGTC CTCTGCCAGG CAATTTCGGC
AGTGCCGATA CCCTCAAGGA CAACCCGGAC ATCAGCATGA AGCGTTATCT CATCGATGTG
GGTCGTGACC ATAACGTGGG TGTGGGTAAC ATCGTGGGCG CCATCGCCAA CGAAGCCAAC
ATCGACAGCC GCTACATCGG CCAGATCCAG CTGTACGATG CAGTAACCAC TGTTGACCTG
CCAGACGGCA TGCCAAAAGA AGTACTGCAG CACCTGAAAA AAGTGCGCGT ATGTGGCAAG
CCACTGAACA TCCGTGAAGT AAGCACCGAT GGCAGCGATG AAATCCCGGT AAGCAACGGG
CCAATCCCCA AGCGCACACG TAAGCCATCC GGCGATCGTC CTGAGCGCGG AGAGCGTAAG
TTCAACGATC GTGGCGGTGA CCGTGGTGAC CGCGGTGGCG ACCGCAAATT TAGCGAGCGC
AAGAGCTTCG ACAAGAAGCC AGCTGGCAAG CCACGCCGTC CAAAGGAAGA CTGA
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| Protein sequence | MSSNEKTFRE LGLTESVLRA LDELGYETPT PIQAASIQPL MSGQDILGQA QTGTGKTGAF
ALPLLCSVDA NLNAPQILVL APTRELAVQV AEAFTSYAKH MKGFHVLPIY GGQSMYQQLQ
ALRRGPQVVV GTPGRVMDHM RRGTLKLDTL KALVLDEADE MLKMGFIDDI EWILEHTPES
RQLALFSATM PEQIKRVANK HLRNPVNISI AASHTTVESI EQRFVQVSQH NKLEALVRVL
EVENTEGIII FVRTRNSCME LAEKLEARGY AASPLHGDMN QQARERAVDQ LKSGKLDILI
ATDVAARGLD VERIGHVVNY DIPYDTEAYV HRIGRTGRAG RTGMAILFVT SREMRMLRTI
ERATNSRISP MKIPSPESVA ERRLSRLGEQ VADILANEHL DFMKGAVAQL CQQLEVDTEQ
LAAALLHQVQ LERPLQLPAM HERQRDNFDE RTGRGQNDRA ERGDRNERRR DSRPLPGNFG
SADTLKDNPD ISMKRYLIDV GRDHNVGVGN IVGAIANEAN IDSRYIGQIQ LYDAVTTVDL
PDGMPKEVLQ HLKKVRVCGK PLNIREVSTD GSDEIPVSNG PIPKRTRKPS GDRPERGERK
FNDRGGDRGD RGGDRKFSER KSFDKKPAGK PRRPKED
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