| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0485 |
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| Symbol | rimO |
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| ID | 4602740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 595731 |
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| End bp | 597212 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779821 |
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| Product | ribosomal protein S12 methylthiotransferase |
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| Protein accession | YP_926365 |
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| Protein GI | 119773625 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.926409 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCATCGGG CCCAGCGCAG TAAATCAAAC CCGTCACGCA ATATCGGAAC GCGCACTTTG
AACAAGACAG TCGAAACTTT TGATCCCAAG CAGACTACCA CGCTCGAGAC CCCAGCCAAG
ACACTGGCAG CAGAAGCCAA GGCCAGCGAC GGCACCATTC AGGGCAACCG TATCGGTTTT
GTCAGCCTGG GCTGCCCCAA GAATCTGGTG GACTCAGAGC GCATTCTGAC CCAACTGCGT
ATCGACGGTT ACGAGGTAAC CAACAGCTAC GACAATGCCG ATCTGGTGAT TGTAAACACC
TGTGGCTTTA TCGATGCCGC CGTGGAAGAG TCGCTGGACG CCGTGCGTGA AGCCCTGGAA
GAAAACGGCA AAGTAATAGT GACCGGCTGT TTGGGCGCCA AAGAAAACCA AATTCGCGAA
GTGCACCCCG ATGTGCTGGA AATTACCGGT CCCCACAGCT ATGAGGCCGT GCTGAATCAC
GTGCACAAGT ATGTGCCAAA GCCAGAGCAC AACCCCTTCA CCTCGCTGAT CCCTCAGACA
GGTGTAAAGC TGACGCCCAA GCACTACGCC TACCTGAAGA TTTCTGAAGG CTGTGACAAC
CGCTGCACCT TCTGCATCAT CCCTGCCCTG CGTGGCGATC TGGACAGCCG TGGCGTAGGC
AGTGTGCTCG ATGAAGCCAA GCGTCTGGTA GAAAGCGGCG TGCAGGAAAT TCTGGTGGTG
AGCCAGGACA CGTCTGCCTA CGGCAAAGAC AAAGATGGCC GCACCGACTT CTGGAACGGC
ATGCCGGTAA AACAAGACAT CACCAGCCTG GCGCGCCAGC TGGGCAAGAT GGGCGCCTGG
GTGCGTCTGC ACTACGTATA CCCATACCCA TGGGTTGACG ACTTGATCCC ACTGATGGCC
GAAGGACTCA TTCTGCCTTA CCTCGACCTG CCGCTGCAGC ACGCCAGCCC ACGCGTTCTG
AAGATGATGA AGCGCCCTGG CCGGGTTGAC CGCCAGCTGG ATGCCATCAA AAAATGGCGT
GAGATCTGCC CGGATCTGGT GATCCGCTCT ACCTTTATCG TGGGCTTCCC CGGCGAGACT
GAAGAAGACT TCGAAATGCT GCTGGACTTC CTGCGTGAAG CACGTCTGGA TCGCGTTGGC
TGTTTCAAGT ATTCCGAGGT GGATGGCGCC GTGGCCAACA CCCTGGCTGA GCTAATCAGC
GAAGAAGTGA AAGAAGACAG ATACGAGCGC TTTATGGAAG TGCAGGCCGA GATCAGCGCC
GAGCGTCTGG CCCGTCTGGT TGGTCGTGAG CTGGACATTC TGATTGATGA CGTTGACGAA
GAAGGCGCCA TCGGCCGCTC TTACGCCGAT GCCCCTGAAA TCGATGGCAT GGTGTTTATC
AATGGCGAAA CCGAGCTGAC TCCCGGTGAT ATGGTGCGTG CCCGCATCGT TGCCTCAGAT
GAGCACGATC TCTGGGCCGA GTTGGTTGCC CTGGAAGACT AA
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| Protein sequence | MHRAQRSKSN PSRNIGTRTL NKTVETFDPK QTTTLETPAK TLAAEAKASD GTIQGNRIGF
VSLGCPKNLV DSERILTQLR IDGYEVTNSY DNADLVIVNT CGFIDAAVEE SLDAVREALE
ENGKVIVTGC LGAKENQIRE VHPDVLEITG PHSYEAVLNH VHKYVPKPEH NPFTSLIPQT
GVKLTPKHYA YLKISEGCDN RCTFCIIPAL RGDLDSRGVG SVLDEAKRLV ESGVQEILVV
SQDTSAYGKD KDGRTDFWNG MPVKQDITSL ARQLGKMGAW VRLHYVYPYP WVDDLIPLMA
EGLILPYLDL PLQHASPRVL KMMKRPGRVD RQLDAIKKWR EICPDLVIRS TFIVGFPGET
EEDFEMLLDF LREARLDRVG CFKYSEVDGA VANTLAELIS EEVKEDRYER FMEVQAEISA
ERLARLVGRE LDILIDDVDE EGAIGRSYAD APEIDGMVFI NGETELTPGD MVRARIVASD
EHDLWAELVA LED
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