Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0460 |
Symbol | |
ID | 4602715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 566805 |
End bp | 567410 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639779796 |
Product | MSHA pilin protein MshB |
Protein accession | YP_926340 |
Protein GI | 119773600 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.671 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCTA AACAGCAGGG ATTTTCACTG ATTGAGCTGG TGATAGTCAT AGTGATTCTT GGGCTATTGG CGGCAACCGC CATTCCCAGA TTTTTGAACA TCACCGATGA AGCAGAAGCG GCCAGCGTGG ATGCGGTCAG CGGTGGCTTG GTTACGGCAG TAAGTTTCGT GCGCGCCCAA TGGGAAATCG ATGGTCGCAA CAACGACTAT GTGTTGCTGG ATGGCACCCA AATAGGGCTC GACAAGCGCT TTGGCTACCC CACCGGCGAT AATAATGTGT CCGCCACTGA CATGACAGAT GCCACCTGCC AGCAGGTATT TAACCTGATT TTGCAAAGCA CGCCCCGTAA TGTGCTTTAC ACCCAGGATG CCCGTAAGCA ACGTTATACC GTGAGGGCAA TTGGCGGCGC GGGTGGCAGT AGTAACGATC TCAATGGTCA AACGGTCAAT GGCCTGGATT TGTGTGTGTA CCATCAGGTG TCATCTCTGA CCCTGGACCC CAACACCGGC ATTGCCAACC CGGTACCGGA TCTGACTACG TCAGGCGCTT CAGGTATTAC CTATAATCCG GGTACCGGCA AGGTGCTCAG CTTCACCAAC CCCTGA
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Protein sequence | MKAKQQGFSL IELVIVIVIL GLLAATAIPR FLNITDEAEA ASVDAVSGGL VTAVSFVRAQ WEIDGRNNDY VLLDGTQIGL DKRFGYPTGD NNVSATDMTD ATCQQVFNLI LQSTPRNVLY TQDARKQRYT VRAIGGAGGS SNDLNGQTVN GLDLCVYHQV SSLTLDPNTG IANPVPDLTT SGASGITYNP GTGKVLSFTN P
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