| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0454 |
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| Symbol | |
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| ID | 4602709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 559471 |
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| End bp | 561156 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779790 |
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| Product | MSHA biogenesis protein MshL |
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| Protein accession | YP_926334 |
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| Protein GI | 119773594 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATTT CTGGTATCAA ATACCTTACC CCTCTGCTGT CGCTGTGCCT GATAGCATGC
CAAACCACTG ACAGGCCCAA CCCTCAGGCG TCCAAAGAGG CGCTCAGGGA GGTTGTGGCT
CAACAAAATG CACAAGCTCA GCCACCGGCC AAATTGCCCG ATTCAGTGTC CCGCGAATTG
GCCGGCAGTA ACACAGTATT TGCGCCAACG CTGCCACCGG AGCGCCGTTT CGATGTGGCT
GCCAATGCGG TGGATGCCAG AGTGTTTTTT CCGAGTTTGG TCAAGGGAAC GCCTTTCAGC
GTGGCCGTAC ACCCCGATGT GCAGGGACGG ATTTCTCTGT CGCTCAAAGG CGTGACCCTG
AGTGAGGCCT TGCAGGTGAT TGAAGACCTG TACGGCTATG AAGTCAGCCA TGAGGGCAAG
GTGCTAAAGG TATTCCCATC GGGCATGCGA ACCGAAACGT TCCCGGTGAA CTACCTCTAT
ATGGAACGCA TGGGGGTGTC TCTAACGTCT GTGACGTCCG GCCGTATTTC CGACAACAAT
AACAACAATA ACAACGGCAA TAACAACAAC GGCAGCAATG GTAATAACGC TTTTGATAAC
GGCGGGGCCA ACAATAACGG TGTCAACGGC AACAATACCA ATGGTAACAA TACCAACGGC
ACCTTTATCC AGTCCCGCAA TAAAACAGAC TTCTGGGGTG AACTGAAAGA AACCCTTGAG
TCCTTGATTG GTGGCACCAG TAACAACCGC AGTGTGGTGG TCACACCCCA GGCCGGCTTG
GTGACTGTGC GTGCGCTGCC GGGTGAGCTG CGTCAGGTGA GGGAGTTTTT GGCCACCGCC
GAAACCCATC TGCAGCGTCA GGTGATTTTG GAGGCCAAGG TGCTTGAGGT GACCCTGTCT
GATGGTTATC AGCAGGGTAT CCAATGGAAC AAGATTGCCG GCAGTGCACT GGCCGATGGC
AACACCAAAA TTAATTTCGC CACTTCAGCA GGCAATGAGT TCGGCAATCA AATTTCCAGT
GCCTTGGGCG GCGTAACCTC GTTGTCCATC ATAGGTTCAG ACTTCGACGC CATGATAAAT
CTCCTCGATA CTCAGGGGGA TGTGGATGTG TTGTCGAGCC CCCGTGTCAC CGCCTCCAAC
AACCAAAAGG CGGTGATCAA GGTGGGCAAG GATGAATACT TTGTCACTGA TGTGTCATCC
ACCACAGTGG CGGGCACCAC ACCTGTGACC AGCCCCGAAG TCGAGCTGAC ACCCTTTTTC
TCCGGTATCG CACTGGATGT TACCCCACAG ATTGACGGCC AGGGCAATGT GCTGCTGCAT
GTGCATCCCT CGGTTATCGA TGTGAAAGAA CAAACCAAGA CCATCAAAAT CAGCAACAGC
GATCTGGAGC TGCCCCTGGC CCAGAGTGAG ATCCGCGAAT CGGATACCGT GATTAAAGCC
ATGTCGGGGG ATGTGGTGGT GATTGGGGGT CTGATGAAGA GTGAGAGCTT GGAGCTGGTG
TCCAAGGTAC CTCTGCTTGG GGATATTCCG TTTCTGGGTG AAGCTTTTAC CAACCGCAGT
CAGTCTGTTC GTAAAACGGA GCTGGTGATA CTGCTCAAAC CAACCGTGGT CGTAAGCGGC
ACCTGGCAGA AAGAGCTGGA GCGGTCAAAG GCCTTGTTGG ACCGTTGGTA TCCCGAGGGC
GAATAA
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| Protein sequence | MAISGIKYLT PLLSLCLIAC QTTDRPNPQA SKEALREVVA QQNAQAQPPA KLPDSVSREL
AGSNTVFAPT LPPERRFDVA ANAVDARVFF PSLVKGTPFS VAVHPDVQGR ISLSLKGVTL
SEALQVIEDL YGYEVSHEGK VLKVFPSGMR TETFPVNYLY MERMGVSLTS VTSGRISDNN
NNNNNGNNNN GSNGNNAFDN GGANNNGVNG NNTNGNNTNG TFIQSRNKTD FWGELKETLE
SLIGGTSNNR SVVVTPQAGL VTVRALPGEL RQVREFLATA ETHLQRQVIL EAKVLEVTLS
DGYQQGIQWN KIAGSALADG NTKINFATSA GNEFGNQISS ALGGVTSLSI IGSDFDAMIN
LLDTQGDVDV LSSPRVTASN NQKAVIKVGK DEYFVTDVSS TTVAGTTPVT SPEVELTPFF
SGIALDVTPQ IDGQGNVLLH VHPSVIDVKE QTKTIKISNS DLELPLAQSE IRESDTVIKA
MSGDVVVIGG LMKSESLELV SKVPLLGDIP FLGEAFTNRS QSVRKTELVI LLKPTVVVSG
TWQKELERSK ALLDRWYPEG E
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