| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0449 |
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| Symbol | |
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| ID | 4602704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 554989 |
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| End bp | 556896 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779785 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_926329 |
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| Protein GI | 119773589 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTGA CTCGCATGCT GACCAAAAAA CTCATCAGCT TCTGGATGAT GTCGCTGGCG
GCAGTCGCTT TTGTGTTTTT GCTCAGCGCC CTGATGAGTT TTGTACAGCT GACCTACCGC
TTTCAACAGC AAAAGGTCGC CGAGCTGGAA ACCATGTTGG TTAACCATTA TCAGCACCAG
AGCAGTTGGG AGCTGGATAG CTGGTTGCCG CCCATGCTGC TGGCCTATAA CACAGTGAGT
TTCCGTTTAA CCCGGGGAGA TGAACTGGTA TTTGAATATC AGGGCAATCT GGGTTCGGAT
CAGACTGTAG TTTACGAGCG TGCCCTCTAT GCCAATGATG CGCTCGAGAT GCGACTGGAG
CTTCCCCGTC CGTTTTCGGC CCACAGACTT GGTTGGCGTG AGCTGATGAT TCTGCTGGTA
GGTATAGTGG CGGTAGCAGG GTTTGTTCGC TTCGGATTCC TGTGGTTTTC TGCCGAGCTT
GAAGGCATAG AGGCGCTGGC GCAGCGCAGT AAACTTATTC TCGATGGCAA GCTGGATGAG
GCGGCCAAAA CCCCGGGGAA CGGTAAACCA CGACTAATCA ATCGTGCGCT CTCAAGACTG
CTTGCTGAAC TTGCCGATGC CCACAAAGAG CGGGCCCGCT TCGATAAATT TATTCGCTCC
AATACCTTTC TCGATCCCCA AACCCGGATA GGAAACAGGC TGTTTTTACA GAACCGTCTC
AACGCTCTCT CAAGCGACCA GGGAATGCTG GCACCCGGTG TCTTGTATCT GCTTGAAATG
GAGGATCTGG ATATTTTGCA GCAGGAGGCT GGCGATGAAG TGGTGCTTGA GCTGCTCCAC
AGCACCATCA ATGCCATAAA CCTGGTGCTG CAAACCCAGG CCAACAGTAT TTTTGCCCGC
CGCTCCCATA ATCAGCTGGC TATCGTAGTG CCGCAAATCT CCCTGGTGGA GGCCGATGCC
CTTGCTGATA AATTGCTGAA AATTTGTCTG GCGCAGCCGC TGCCGAAAAT TGAAGAAGCC
GATAACTTTT TCCATCTGGG GGGCGCTTAC TTTAAAGAGG GCGACATGCC TGAACCCTTG
CTGGACGAGG CTGACATGGC TCTGCGCGCT GCGCAGCTGC AGGGTGCCAG TGGCTGGTTT
ATGTATGACA AGGGCGCTGT GGATCAAGAG TTTGCCAAGG GCTCAGTACG CTGGCGCTCT
TTTCTTGAAA ATGCTCTGGT TAACCGAAAT TTCGTTACTT TTGCCCAGCC TGTGTGCGAA
GGCGATGGCA GTCATCATCA CCATGAAATT TTTACCCGGG TGCGGGACCC CATGGGTAGC
CTGGTCAGGG CGACTCTGTT TATCCCCATG GCGGTGAAAT GTGGCCTGAT GCCGCAAATC
GAGCGGCAGG TGGTGGAGCG AACCCTGTTT GAGCTGATGT CAGATACCGG CACTGCCAAG
CGACATTACA GCATCAACCT GAGTGTGGAT TCCCTTACCA GCCGTGCCTT TGTGCGCTGG
CTGCAAACCA CCTTGCTCGA ATACCGTCAT CTGGCATCCC GGCTGGTGTT TGAGGTTACC
GAAGATATGG TGATGAAGCA CCGAAGTCAG CTTGAGCCCA AGCTTAATAT GCTGCGTAAA
ATGGGCAGCC GTATCTGTGT GGACCATGTT GGGCAGCAGG TAGTCAGCAC TCAGTATATC
CGTGAGTTGG GTTTTAACTT TATCAAGCTG CACCGCTCAG TGGTCCGTCA AATAGATTTA
CGCCCCGAGA ATCAGCTGTT TGTCCGCAGT CTAATCGGCA GTTTGTACCG CACCGATGTA
CAGGTGTTTG CCGAGGGGGT TGGTTCCTTT GAAGAGTGGC AAACACTGCA AATTTTGGGG
GTCAGTGCAG GACAGGGCAC CTACTTTGGC GATCCACAGC AGATCTGA
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| Protein sequence | MQLTRMLTKK LISFWMMSLA AVAFVFLLSA LMSFVQLTYR FQQQKVAELE TMLVNHYQHQ
SSWELDSWLP PMLLAYNTVS FRLTRGDELV FEYQGNLGSD QTVVYERALY ANDALEMRLE
LPRPFSAHRL GWRELMILLV GIVAVAGFVR FGFLWFSAEL EGIEALAQRS KLILDGKLDE
AAKTPGNGKP RLINRALSRL LAELADAHKE RARFDKFIRS NTFLDPQTRI GNRLFLQNRL
NALSSDQGML APGVLYLLEM EDLDILQQEA GDEVVLELLH STINAINLVL QTQANSIFAR
RSHNQLAIVV PQISLVEADA LADKLLKICL AQPLPKIEEA DNFFHLGGAY FKEGDMPEPL
LDEADMALRA AQLQGASGWF MYDKGAVDQE FAKGSVRWRS FLENALVNRN FVTFAQPVCE
GDGSHHHHEI FTRVRDPMGS LVRATLFIPM AVKCGLMPQI ERQVVERTLF ELMSDTGTAK
RHYSINLSVD SLTSRAFVRW LQTTLLEYRH LASRLVFEVT EDMVMKHRSQ LEPKLNMLRK
MGSRICVDHV GQQVVSTQYI RELGFNFIKL HRSVVRQIDL RPENQLFVRS LIGSLYRTDV
QVFAEGVGSF EEWQTLQILG VSAGQGTYFG DPQQI
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