| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0440 |
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| Symbol | hslU |
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| ID | 4602695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 542817 |
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| End bp | 544142 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779776 |
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| Product | ATP-dependent protease ATP-binding subunit HslU |
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| Protein accession | YP_926320 |
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| Protein GI | 119773580 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
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| TIGRFAM ID | [TIGR00390] ATP-dependent protease HslVU, ATPase subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGAAA TGACTCCCCG CGAGATTGTT CACGAGCTGG ACGCCCATAT CATTGGTCAG
CAAAAAGCCA AACGCAGCGT GGCCGTGGCC CTGCGTAACC GCTGGCGCCG CATGCAACTG
GACGCCGCCC TGCGTCACGA AGTGACCCCC AAGAATATCC TGATGATTGG CCCTACCGGC
GTGGGTAAAA CCGAAATTGC CCGCCGCCTG GCAAAGCTCG CCAACGCGCC CTTTATCAAG
GTGGAAGCCA CCAAGTTCAC CGAGGTGGGC TATGTGGGTA AGGAAGTGGA GCAGATCATT
CGCGATCTGA CCGACACCGC CATTAAGCTT ACCCGCGAAG TAGAAATGAA AAAGTGCCGC
ACCCGCGCCG AAGAGGCCGC CGAGGAGCGG GTACTGGATG CCCTGTTGCC CCGCCCGAAA
AACGATTGGG ACAACAACAG CGATGACAAT TCTTCCAGCC GTCAAATCTT CCGCAAAAAG
CTGCGTGAAG GTCAGCTGGA CGATAAAGAA ATCGAAATCG ATATTGCTGG CCCGCAAATT
GGTGTGGAAA TCATGTCACC ACCCGGCATG GAAGAAATGA CCAATCAGCT GCAGAGCCTG
TTCCAGAACA TGGGTCAGGC GCCTGCCAAG CGCAAGAAGA TGAAGATCAA AGAGGCCCTC
AAGCAACTGG TGGATGAAGA AGCCGCCAAG CTTGTGAATC AGGAAGATCT GAAAGAAAAG
GCCATCGAAC TGGTGGAGCA GCACGGTATC GTCTTTATCG ATGAAATCGA CAAAATCTGT
AAGCGCGGCG AAACCTCAGG CCCAGATGTA TCCCGCGAAG GGGTACAGCG CGACCTGCTG
CCCCTGGTGG AAGGTTGCAC AGTTAACACC AAGCACGGCA TGGTGAAAAC CGACCATATC
CTGTTTATCG CGTCGGGCGC ATTCCAGATG TCCAAACCAT CGGATCTTAT TCCCGAGCTG
CAGGGCCGCC TGCCCATCCG GGTTGAGCTG GATGCCCTCA CCGCTTCCGA CTTCAAGCGT
ATTCTCACCG AGCCACACGC CTCGCTCACC GAGCAATACG TGGCGCTGAT GGCCACCGAA
GGCGTGACCA TCGAGTTTAC CGAGACCGGC ATCGACCGCA TCGCCCAGGC CGCCTGGCAG
GTGAACGAGC GCACCGAAAA CATCGGTGCC CGCCGTCTGC ACACGGTCAT GGAGCGGCTA
ATGGAAGACA TTTCCTTCGA AGCCAGCGAC AAGTCAGGCA GCAAATTCAC TATAGATGCC
GATTACGTGA ATGCGCATCT GGATAACCTG GTGCAGGACG AAGACTTGAG CCGCTTTATT
CTGTAA
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| Protein sequence | MSEMTPREIV HELDAHIIGQ QKAKRSVAVA LRNRWRRMQL DAALRHEVTP KNILMIGPTG
VGKTEIARRL AKLANAPFIK VEATKFTEVG YVGKEVEQII RDLTDTAIKL TREVEMKKCR
TRAEEAAEER VLDALLPRPK NDWDNNSDDN SSSRQIFRKK LREGQLDDKE IEIDIAGPQI
GVEIMSPPGM EEMTNQLQSL FQNMGQAPAK RKKMKIKEAL KQLVDEEAAK LVNQEDLKEK
AIELVEQHGI VFIDEIDKIC KRGETSGPDV SREGVQRDLL PLVEGCTVNT KHGMVKTDHI
LFIASGAFQM SKPSDLIPEL QGRLPIRVEL DALTASDFKR ILTEPHASLT EQYVALMATE
GVTIEFTETG IDRIAQAAWQ VNERTENIGA RRLHTVMERL MEDISFEASD KSGSKFTIDA
DYVNAHLDNL VQDEDLSRFI L
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