| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0414 |
|---|
| Symbol | |
|---|
| ID | 4602669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 510724 |
|---|
| End bp | 511191 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639779750 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_926294 |
|---|
| Protein GI | 119773554 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1585] Membrane protein implicated in regulation of membrane protease activity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0427482 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTTT CTAATCCGGT ACTGATATGG GCGGGGATTG GCGTAGTGCT GATGCTGGCC
GAAGTCATAG TGCCAGGTGG CATAGTGATA CTGCTCGGGG CTGCGTGCTT GGTGGTTTCG
GGGGCGTTGG GACTGGGCCT GGTGGACGGT TTCATCCAGA GCATGACGCT GTGGTTTATC
GCGTCCATGG TATTGCTGCT TGGCTTTCGT CATATTACCC AGCGTCTGGT GGGGGGAGAC
TCCCATGTAG ACAACACAGA TGAGGCGCTG GATATCTATA ACCAGACTGC GCTGGTCAAG
GCCGACATAG GGCCGGGTGA AAAGGCCGGC AGGGTGGAGT TTCAGGGAGC CGATTGGCCT
GCTCTGGGTG ATGGCACTCT GATCCCGAGT GGCACCCAGG TACGGGTGAT CTGCAGGGAA
AACATTTCTT TGATTGTTGA GGCGCTTCCT GCGCAGCACA TCGTCTGA
|
|---|
| Protein sequence | MEFSNPVLIW AGIGVVLMLA EVIVPGGIVI LLGAACLVVS GALGLGLVDG FIQSMTLWFI
ASMVLLLGFR HITQRLVGGD SHVDNTDEAL DIYNQTALVK ADIGPGEKAG RVEFQGADWP
ALGDGTLIPS GTQVRVICRE NISLIVEALP AQHIV
|
|---|
| |