Gene Sama_0397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0397 
Symbol 
ID4602652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp493621 
End bp495093 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content59% 
IMG OID639779733 
Producthypothetical protein 
Protein accessionYP_926277 
Protein GI119773537 
COG category[R] General function prediction only 
COG ID[COG0701] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCTGA ACAACTTTCT TCACCTGTTT TTGGAGTCAG CCCCCTGGCT GCTGCTGGGG 
CTGTTTCTGG CGGGCATGCT GAAAATGTTT GTGCCCATGG CGTGGATGCA AAAGCAGCTC
GGTGGACATG GTTTTAAGGC CACGGTTAAG GCTGCGCTCT TGGGCGCGCC CTTGCCGCTG
TGTTCCTGCG GGGTGATTCC AGCCGCAGTG GGCCTTCGGC GCAGCGGCGC TTCCAAGGCG
GCCACTACCT CGTTTTTGGT GTCTACTCCT GAGACTGGCG TGGATTCTGT GACTGTATCC
TACGTGCTGC TTGGCCCCTT TATGGCGATA GTGCGGCCGA TTGCCGCTGT GACCAGCGCC
ATAGTGGCAG GGCTGCTGGT AGGCCGCGAT GAGGATACGC CGGATAATGC ATCCCAATCC
GCTGAAACAT CGTCTGATAA GCAGTCTGAT AAGCCAATAA CCCAGGCCGC CAAGCCCGCC
ATGAGCTTCA AACCGGTTGC TGCAAACAGC CCGCTGATGA CCCCTACCGG CGCCAAACTT
GCAGCCGCCC CAGCGGTGAG CTTCAAGCCA GTTGCCGAAA ACACTGGCAG AAGCTGCTGC
TCAGGTAACG CCGAAGCTGA GCCAAAGCCC GAATCCAAGC CCCAGCCCAA GTCCGAACTC
AGGCAAGAGT CTTGCTGCGC GCCGAAGGCG GTTGCGGCTT CTTGCTGCGA TACTAATGCT
TCCTGCTGCG ATGCCAAGCC CGCCGCTGAA ACGGCCTCTT GTTGCAGCCC CAAGGTCGTA
GTGCCCGAGG CCTCAAGCTG TTGCGCTGCT TCATCTACAT CCGCATCCAC GGCTACATCG
GCCGATACAG GCTGCTGTGG CAGCACGGAA CAAGATGCTC GCCCAGCGAA CCAGCCCGCC
TCTGTGATTG AGCGGATTTG GGATGGCCTT GTGTATGCCT CAACCGACCT GGTGCGCGAT
ACCGCCATCT GGCTGCTGAT AGGTCTTTTC TTTGCCGCCT TGGTACAAAC CTATGTACCG
GCAGACTTTC TAGCGCAGTG GGGCAACGGT ATCCTCGCCA TGTTGGTGAT GGTGCTGGTG
TCCATTCCCA TGTATATCTG CGCTACAGCT TCGACCCCCA TTGCCGCTGG TTTGCTGCTG
GCCGGGGTGT CACCCGGCGC CGTACTGGTG TTTATGATGG CAGGCCCTGC CACCAATATC
GCCACGCTCG GAGTCGTAAC CAAGGAGCTG GGTAAGCGGG CACTGTTTGG CTACCTCGGT
GGTGTGCTTG GGGTGGCTTT GGTGTTTGGC GTGCTGGTGA ATTATCTGGT TGCCACTTTC
GGCTTCGAAG TGGCGCCGCA GATTGGTGAA GAGCATGCCA TGCTGCCCGA CTGGTTGGTG
GCCTCATCCG GGCTGCTGCT GGCTTTCCTG ATGGGTCGGG TGCTGTGGCA AAAGCTGCCA
CGCAAACAAA AAACCGGCGG TTGCTGCAGC TAA
 
Protein sequence
MLLNNFLHLF LESAPWLLLG LFLAGMLKMF VPMAWMQKQL GGHGFKATVK AALLGAPLPL 
CSCGVIPAAV GLRRSGASKA ATTSFLVSTP ETGVDSVTVS YVLLGPFMAI VRPIAAVTSA
IVAGLLVGRD EDTPDNASQS AETSSDKQSD KPITQAAKPA MSFKPVAANS PLMTPTGAKL
AAAPAVSFKP VAENTGRSCC SGNAEAEPKP ESKPQPKSEL RQESCCAPKA VAASCCDTNA
SCCDAKPAAE TASCCSPKVV VPEASSCCAA SSTSASTATS ADTGCCGSTE QDARPANQPA
SVIERIWDGL VYASTDLVRD TAIWLLIGLF FAALVQTYVP ADFLAQWGNG ILAMLVMVLV
SIPMYICATA STPIAAGLLL AGVSPGAVLV FMMAGPATNI ATLGVVTKEL GKRALFGYLG
GVLGVALVFG VLVNYLVATF GFEVAPQIGE EHAMLPDWLV ASSGLLLAFL MGRVLWQKLP
RKQKTGGCCS