| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0368 |
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| Symbol | |
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| ID | 4602624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 444884 |
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| End bp | 446143 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639779705 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | YP_926249 |
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| Protein GI | 119773509 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.206315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000947643 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCCACAG CCGTCGCAAA CAAATCCAAA AAGCAGACAC AAAAGCTAGC TCCCAAGGTC
TATAACTTTG AATGGAAGGG CTTAAACCGA GATGGCAAAA AATCCAGCGG TGAGCTCAGG
GGCGCGTCTG TTGCCGAAAT TAAAACCCTT CTTAAAAATC AGGGTATAAA CCCCAAGGTA
GTTCGTAAGA AGTCTGATGG CCTTTTTGGT GCCAGCAATA AAAAGATCAA TGCGATGGAC
ATCGCCATGG TCACCCGCCA AATAGCCACC ATGCTGATGG CAGGTGTGCC CTTGGTGACC
ACCATAGAAA TCCTCGGTAA AGGCCATGAA AAGCCCAAGA TGAGAGAATT GCTTGGCACC
ATTCTTAACG ACATTCAGGC AGGTATTCCA CTCTCTGATG CACTGCGGCC CCACAGAATT
TACTTTGATG ACTTATACGT AGACCTGGTG GCCGCCGGTG AGCACTCGGG TTCACTGGAT
ACTGTTTTTG ACAGGATTGC AACTTATAGA GAAAAAGCAG AAGCCCTGAA GTCCAAAATC
AAAAAGGCCA TGTTTTATCC CGCTGCGGTC GTGGTGGTTG CGATTGCTGT TACCACCTTG
CTGCTGCTCT TCGTAGTACC CCAGTTTGAA GAAATTTTTA CCAGTTTCGG TGCTGAACTT
CCTGCATTCA CCCAGCTCAT TATCAATATC TCACGATTTC TGCAGTCATC TTGGTATTTC
TTCCTCACCG CCATCGTTGG CTCTATCTGG CTCTATGTCC GCGCCCACCG GAATTCTCAA
GCAGTACGCG ATAGGCAAGA CGAGTTTGTG CTTAAAATCC CTGTGATTGG AGAAATCTTA
CACAAGGCTG CCATGGCCCG CTTTGCCCGC ACCCTGGCGA CCACCTTTGC AGCTGGTGTT
CCCCTGATTG ATGGCCTGGA GTCTGCGGCA GGTGCTTCTG GTAATGCCGT TTACCGTAAA
GCACTTTTGC GAATTCGCAC CGAAGTGATG GCCGGTATGC AAATGAACGT GGCCATGCGT
ACCGTTAACC TCTTCCCGGA TATGCTCATT CAAATGGTGA TGATTGGTGA AGAGTCAGGT
TCGCTGGATA ATATGCTCAA CAAAATTGCC AACATCTATG AGATGCAGGT GGATGATGCC
GTTGATGGCC TCTCGAGCCT GATTGAACCC ATTATGATGG TGGTTATCGG TACCCTTGTC
GGCGGCCTGA TTGTGGGTAT GTATCTGCCT ATCTTCCAGA TGGGTAATGT GGTTGGCTAA
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| Protein sequence | MATAVANKSK KQTQKLAPKV YNFEWKGLNR DGKKSSGELR GASVAEIKTL LKNQGINPKV
VRKKSDGLFG ASNKKINAMD IAMVTRQIAT MLMAGVPLVT TIEILGKGHE KPKMRELLGT
ILNDIQAGIP LSDALRPHRI YFDDLYVDLV AAGEHSGSLD TVFDRIATYR EKAEALKSKI
KKAMFYPAAV VVVAIAVTTL LLLFVVPQFE EIFTSFGAEL PAFTQLIINI SRFLQSSWYF
FLTAIVGSIW LYVRAHRNSQ AVRDRQDEFV LKIPVIGEIL HKAAMARFAR TLATTFAAGV
PLIDGLESAA GASGNAVYRK ALLRIRTEVM AGMQMNVAMR TVNLFPDMLI QMVMIGEESG
SLDNMLNKIA NIYEMQVDDA VDGLSSLIEP IMMVVIGTLV GGLIVGMYLP IFQMGNVVG
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