| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0352 |
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| Symbol | murD |
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| ID | 4602608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 421842 |
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| End bp | 423173 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779681 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_926233 |
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| Protein GI | 119773493 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000702513 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTCTGC CACTGGATAA GCCACACTCA CACGTCGTTC TGGGCCTTGG TGCCACGGGA
CTGTCTGTGG TGCGCTTTCT GGCACGCAAA GGCATAGTGC CGCTGGTGAT GGACAGCCGT
CGCCAGCCGC CGGGTATGGA TGTACTCAGT GCCGAGTTTC CGGATGTTAC GCTGGTTACG
GGGGGCTTCG ACTGCCGCTA TCTGGTGCAG GCTCAGAGCA TCATCATCAG CCCGGGTATT
GCCGTCGATA CCCCAGAGGT GCGTGCGGCC ATGGACATGG GCATTGAAGT GATTGGCGAT
GTCGAGCTTT TTGCCCGCGA AATACAGGAC ATGGCGCCCT GCGTGCTGGC CATTACAGGC
TCCAATGGCA AGTCAACCGT GACTACTCTG GTGGGGGAAA TGGCCAGGGC TGATAACAAG
GCCGTAGCCG TTGGCGGCAA TATTGGCGTA CCTGCGCTGG AGCTGCTGGG CAAAGGCGCC
GAGCTCTTTG TGCTGGAACT GTCCAGCTTC CAACTGGAAA CCACCCACAG TCTTCATTGT
ATTGCAGGCA CCTGCCTGAA CATCAGTGAA GACCATATGG ACAGGTACAC AGATCTTGAA
GCCTATCGTC AGGCCAAATT GCGGCTCTAT CCGCAAAGTA AGCTCAGCGT CTACAACCGG
GACGATGCGG CGACCATACC TGACGAACCA CGCAATACCG TCAGTTTTGG CTTGGGTGTA
CCCGAGCTTG ATGACTGGGG GCTGATGGAT GGCAAAATTT ACCACGGCGC CAGTGAAATC
ATGAATTTAT TGGACGTGGC GTTGATTGGC AGCCATAACC ACGCCAACCT GCTCGCCGCC
ATGGCACTGT GCGAAGCCGC AGGTATTTCC CGCGAGGCCA TGGTGAAGGT CGCGAAGGAA
TTTACCGGGC TGGCGCACCG CTGCGAATTG GTGGCAAGCC ACAACAGCAT TGCCTGGGTC
AACGACTCAA AGGCCACCAA TGTGGGGGCA ACTGTTGCAG CGCTCAATGG CCTTGCTGAA
CATCTGGGTG ACATCATTCT GATTGCCGGC GGTGATGGTA AAGGGGCCGA CTTCGAACCT
CTGCGCGGTG CGCTGGGGGC TGTTAGCCAC CTTATTACCC TGGGCCGCGA TGGCGACAAG
ATTGCCGTGC TGAAAGAAGG CGCCATCAAG GTGGCAACCA TGGCGGAAGC GGTTGAAAAG
GCAAAAGCCC TGGCAAACCC GGGTGACATT GTGCTCTTGT CTCCAGCCTG CGCCAGCCTG
GACATGTACA CCAACTTTAT GGCCCGAGGG GATGATTTCA GGGCCAATGT GGAGCGGGTC
TATGGCAACT GA
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| Protein sequence | MGLPLDKPHS HVVLGLGATG LSVVRFLARK GIVPLVMDSR RQPPGMDVLS AEFPDVTLVT
GGFDCRYLVQ AQSIIISPGI AVDTPEVRAA MDMGIEVIGD VELFAREIQD MAPCVLAITG
SNGKSTVTTL VGEMARADNK AVAVGGNIGV PALELLGKGA ELFVLELSSF QLETTHSLHC
IAGTCLNISE DHMDRYTDLE AYRQAKLRLY PQSKLSVYNR DDAATIPDEP RNTVSFGLGV
PELDDWGLMD GKIYHGASEI MNLLDVALIG SHNHANLLAA MALCEAAGIS REAMVKVAKE
FTGLAHRCEL VASHNSIAWV NDSKATNVGA TVAALNGLAE HLGDIILIAG GDGKGADFEP
LRGALGAVSH LITLGRDGDK IAVLKEGAIK VATMAEAVEK AKALANPGDI VLLSPACASL
DMYTNFMARG DDFRANVERV YGN
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