Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0327 |
Symbol | radC |
ID | 4602583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 394468 |
End bp | 395145 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639779656 |
Product | DNA repair protein RadC |
Protein accession | YP_926208 |
Protein GI | 119773468 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2003] DNA repair proteins |
TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000320995 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAATTC GGGACTGGCC TGAGGGAGAG GGGCCACGTG AAAAATTATT GCAGCGGGGC GCGGCTCATT TATCGGACGC AGAATTACTG GCAGTGCTGC TGCGAAATGG GGTTAGTGGT CAAAATGCGG TTGACCTGGC GAGGGAACTT ATCGGTGAAT TTGGTGGATT ACGGCCTTTA TTCAGTGCAA CTAAGCAGCA GGTGTGTCGA CTCCAGGGCC TGGGTCCGGT AAAATACGCC CAGCTTCAGG CTTCTGCTGA GCTTGCCAGG CGACTGGCGG GTGAATCTTT GCAGCGGGGC GCTGTGCTGA CAAGTCCGGA TTTGACCCGG GATTACCTGA GATTTCAGTT GGCAGACAGA GCCTATGAGG TATTTGCCGT CTTGCTGCTC GACAGCCAAC ACAGGGTCAT CCAGTTTGTC GAATTGTTTC GAGGCACCAT AGATGCAGCA TCGGTATATC CCCGGGAGCT GGTGTCACTG GTGTTGGAAA AGCGGGCGGC AGCGGTCATC GTCTGCCATA ACCATCCGTC TGGGGTCGCT GAACCCAGCC AAGCCGACAG ACGGATCACT GAAAGATTGA AAAATGCCTT GGCAACCATA GATGTATCCT TACTGGATCA CATGGTTGTA GGGGACCGGG AGATAGTCTC CTTTGCCGAG CGAGGGTGGA TTGGATGA
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Protein sequence | MAIRDWPEGE GPREKLLQRG AAHLSDAELL AVLLRNGVSG QNAVDLAREL IGEFGGLRPL FSATKQQVCR LQGLGPVKYA QLQASAELAR RLAGESLQRG AVLTSPDLTR DYLRFQLADR AYEVFAVLLL DSQHRVIQFV ELFRGTIDAA SVYPRELVSL VLEKRAAAVI VCHNHPSGVA EPSQADRRIT ERLKNALATI DVSLLDHMVV GDREIVSFAE RGWIG
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