| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0302 |
|---|
| Symbol | |
|---|
| ID | 4602558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 365361 |
|---|
| End bp | 367952 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779631 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_926183 |
|---|
| Protein GI | 119773443 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAC ATTCCTTCGA GCCTTTTGGT CAATCTCTGA ACTCTTTGGG GCAATCAATG
GACCTGGGCG GCCAGTGGCA ATTTCGTCAG CAGGGTAAAG CCGAATGGCT TCCGGCTCAG
GTGCCCGGCT GTAACTTTAC CGACCTGCTC GCCAATGGTC TGATTGACGA CCCCTTCTAT
CGGGACAATG AAGAAAAGCT GCAATGGATT GAGCAAGAGG ACTGGCAGTA TCGCAAGACC
TTTAGTCTGG ATACTGACTG GTGGCAAAAC GATGAGGTGC AACTGGTCGC CGATGGCCTG
GATACCTATT GCGACCTGTA CCTCAATGGC CATAAGCTTG GCGACAGTCG CAACATGTTT
ATTGGCCAGC GTATTTCCTG TAAGTCGCTG CTGAAGGTCG GGGAAAACCT GCTGGAGATT
CATTTTCGTT CACCCATTAA GGAAACCCTG CCGCTGCATC AGGCGGCGGG CTTTACCTAT
CCGGCGGAAA ACGACAAGTC GGTCGAGAAA CTCAGTGTGT ACAATCGCAA GGCGCCCTGC
CATTTTGGCT GGGACTGGGG CCCAAGGTTT GTCACCAGTG GCATCTGGCG TGCCATCGGT
CTGCAGGGAA TCAAACGAGG CCGTATTGAT GGGGTGCATT TTGTGCAGCA TAGCCTCAGC
AGTGACAAGG CTGAGTTCAG CTTCGATGTG AGCCTGGCGC TGTGCAATAC AGACAATCAG
GAAGGCGAGC TGAGTCTGCG GGTTGCGTGC CCGGCTGCGC CCGAGCTTAA CCGGGAAGTG
CCACTTAACC GTGACGTGCC GCTGACTGAA CAATCCGCGC TGCGATTGGA CTTCGAGCTC
ACCAATCCCA ATCTCTGGTG GCCCAATGGT CTGGGTGAAG CCCACCTATA TGAGTTCCAT
TTTACCTTGC TCGCCGGCGA TGAGCCGTTG GCACAGCACA GCCAGGCCGT TGGTCTGCGT
ACCCTGGAAG TCATCAACGA AGCTGATGGC ATGGGGCAAT CCTTCTACCT CAGGGTCAAT
GGCCAGCCGG TGTTTATGAA GGGGGCCAAC TATATTCCCG GTGACAGCTT TATCCACCGC
ATGACACCCG ATCGTCATCA GGCTGACTTT GACGCCGTGG TGGATGCCAA CATGAATATG
CTGCGGGTAT GGGGCGGTGG TGTGTATCAG GATGAGGTCT TTTATCGCCT GGCCGATGAA
AACGGCATCC TGATTTGGCA GGATTTTATG TTCGCCTGCT CCCTGTACCC GGCCGATGAA
GCCTTTCTGG ACAACGTCCG CGAAGAAGCG GTTTATAACA TCAAGCGCCT GCGCAATCAT
CCCTGTTTGG CACTCTGGTG CGGCAACAAC GAAGTGGACA TGGGTATCAA GCATTGGCAG
TGGCCTGAGA AGTTTGGCTA CAGCGATGAA CTCTATGCCC GCCTGAAGAA CGACTACATC
CGCTTGTTCG ATGAGTGTCT GCCTGGGGCC GTGGCCGAGT TGGACGCCGG ACGCTTTTAT
TTGCGCTCGT CCCCCATAGG CTTCTGGGAA GAAGACATGG ACCACATAGG CAATCACCAT
TACTGGGGGG TGTGGCACGG CGAGGAGCCC TTCAGCGAAT ATCAGAAACG TATTCCCCGC
TTTATGAGTG AGTTCGGCTT TCAGTCGTTC CCGCTGGCCT CGTCCATGGC GCGTTTTACC
GAGGAGACTG ACTGGCATCT GGAATCAAGC GTGCTCAGGG TGCATCAGAA ACACCCCCGG
GGTAACAAGC TTATTCGCAG CTACATGGAG CAGGAATACC GGGATCCGGA AAACTTCCCA
CGACTGTTGT TTTTAAGTCA GGTACAACAG GCAGAAGGCC TGAAGCTGGC GTTTGAGGCC
CACAGGGCTG CGCGGCCATT TTGCATGGGC AGCCTCTACT GGCAGCTTAA CGACACCTGG
CCCGCGGCGT CCTGGTCCGG TATCGATTAT TACGGCCGCT GGAAGGCGCT GCACTATCAG
GCCAAACGCA GTTTCCGCAC CGACCTGCTG GTGGTGGATG AGGTCGATGG CGCTGTTCGT
GTCCGTTTGG TGAGCGACCG CCTGAAGTCG GTTAAGGCAA GGCTCGTGCT TGAGCTGCTG
GACTTTGATG GCAACTGCCT GTGGCAGGAG CAGCAAGCGC TTGATACCCC AAAAAATACC
AGCACCCAGG TATGCCAGTT GGAGAGGGCA AGCCTGCTTG GCGAGCACAA TCCCTGTCAG
CTGATGCTGA GGGGACGCCT GCTGGATGAG CAGGGGCAAC TGCTGACCGA TTGCCTGTAT
TATTTTGTGC CGAGCAAAGA TCTGGCACTG AAAACGCCGG CGCTGACCCT TGAGCCAAGC
TTCGATGCTG AGGGGCTCCG CCTGACCCTT AACACCAATA CGCTTATTCG CCAGTGCCAT
TTGGAGCTGC CTGAAGTTGC CGGTAATTGC TCTGGTCATT GCTCTGGTAA TTTTTCCGAC
AACTTCTTCG ATTTGGTCCC CGGCGAGCCA AAGTGCATCC ACATTGCTTT ACTGGGCATG
GATGAGGATA CCAAGGCGGC TCTGGTGAAG GGCATTCGCT GTCAATCCCT GGTGCAGGAG
GAAACCCAAT GA
|
|---|
| Protein sequence | MTTHSFEPFG QSLNSLGQSM DLGGQWQFRQ QGKAEWLPAQ VPGCNFTDLL ANGLIDDPFY
RDNEEKLQWI EQEDWQYRKT FSLDTDWWQN DEVQLVADGL DTYCDLYLNG HKLGDSRNMF
IGQRISCKSL LKVGENLLEI HFRSPIKETL PLHQAAGFTY PAENDKSVEK LSVYNRKAPC
HFGWDWGPRF VTSGIWRAIG LQGIKRGRID GVHFVQHSLS SDKAEFSFDV SLALCNTDNQ
EGELSLRVAC PAAPELNREV PLNRDVPLTE QSALRLDFEL TNPNLWWPNG LGEAHLYEFH
FTLLAGDEPL AQHSQAVGLR TLEVINEADG MGQSFYLRVN GQPVFMKGAN YIPGDSFIHR
MTPDRHQADF DAVVDANMNM LRVWGGGVYQ DEVFYRLADE NGILIWQDFM FACSLYPADE
AFLDNVREEA VYNIKRLRNH PCLALWCGNN EVDMGIKHWQ WPEKFGYSDE LYARLKNDYI
RLFDECLPGA VAELDAGRFY LRSSPIGFWE EDMDHIGNHH YWGVWHGEEP FSEYQKRIPR
FMSEFGFQSF PLASSMARFT EETDWHLESS VLRVHQKHPR GNKLIRSYME QEYRDPENFP
RLLFLSQVQQ AEGLKLAFEA HRAARPFCMG SLYWQLNDTW PAASWSGIDY YGRWKALHYQ
AKRSFRTDLL VVDEVDGAVR VRLVSDRLKS VKARLVLELL DFDGNCLWQE QQALDTPKNT
STQVCQLERA SLLGEHNPCQ LMLRGRLLDE QGQLLTDCLY YFVPSKDLAL KTPALTLEPS
FDAEGLRLTL NTNTLIRQCH LELPEVAGNC SGHCSGNFSD NFFDLVPGEP KCIHIALLGM
DEDTKAALVK GIRCQSLVQE ETQ
|
|---|
| |