Gene Sama_0263 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0263 
Symbol 
ID4602519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp302424 
End bp302807 
Gene Length384 bp 
Protein Length127 aa 
Translation table11 
GC content56% 
IMG OID639779592 
ProductYjgF-like protein 
Protein accessionYP_926144 
Protein GI119773404 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0251] Putative translation initiation inhibitor, yjgF family 
TIGRFAM ID[TIGR00004] endoribonuclease L-PSP, putative 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.668867 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAA AAACCATTAT CGCCACCGAC AAGGCTCCTG CGGCTATCGG TACCTATTCC 
CAGGCCGTAA AGGTCGGCTC TACCGTGTAT CTGTCTGGTC AGATCCCTCT GGATCCCGCC
ACCATGACCC TGGTCGGCGA CGACTTTGAA GCCCAAACAG TGCAGGTATT TGAAAACCTC
AAGGCCGTAT GTGAAGCCGC CGGCGGCAGC TTTGCCGACA TCGCCAAGCT GAATATCTTC
CTCACTGACC TGTCGAACTT CGCCAAGGTG AATGAGATCA TGGGCCGTTA TTTCAACGAG
CCCTACCCTG CCCGCGCCGC CATCGGCGTA AAAGAGCTGC CACGTGGCTC ACAGGTAGAA
ATGGATGGGG TGATGGAGCT GTAA
 
Protein sequence
MAEKTIIATD KAPAAIGTYS QAVKVGSTVY LSGQIPLDPA TMTLVGDDFE AQTVQVFENL 
KAVCEAAGGS FADIAKLNIF LTDLSNFAKV NEIMGRYFNE PYPARAAIGV KELPRGSQVE
MDGVMEL