| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0230 |
|---|
| Symbol | rpsE |
|---|
| ID | 4602486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 259911 |
|---|
| End bp | 260417 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639779551 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_926111 |
|---|
| Protein GI | 119773371 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000259388 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000856318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAG TAGAAGCTCA GCAGCAGAAA GACGATCTGC AAGAGAAACT GATTGCAGTA
AACCGTGTTT CTAAAGTAGT TAAGGGCGGT CGTATCTTCA GCTTCACTGC ATTGACTGTA
GTGGGTGATG GTAACGGTCG TGTTGGCTAC GGCTACGGCA AAGCCCGTGA AGTTCCAGCT
GCCATCCAAA AGGCAATGGA AAAGGCTCGT CGTAACATGG TGACTGTAGA ACTGAACGAA
GGCACTCTGC ACCACCCAGT TAAGGGACGT CACACCGGTT CGCGTGTTTA CATGCAGCCT
GCGTCTCAGG GTACCGGTAT TATTGCCGGT GGTGCGATGC GCGCCGTATT GGAAGTAGCA
GGCGTTCACA ACGTACTGTC TAAGGCCTAC GGTTCCACTA ACCCGATCAA CATCGTTCGC
GCGACTGTTG ATGCTCTGAC GCACATGAAG TCACCAGCGC AGGTTGCTGC CAAGCGTGGT
CTGAGCGTCG AAGAAATTCG GGGGTAA
|
|---|
| Protein sequence | MAKVEAQQQK DDLQEKLIAV NRVSKVVKGG RIFSFTALTV VGDGNGRVGY GYGKAREVPA
AIQKAMEKAR RNMVTVELNE GTLHHPVKGR HTGSRVYMQP ASQGTGIIAG GAMRAVLEVA
GVHNVLSKAY GSTNPINIVR ATVDALTHMK SPAQVAAKRG LSVEEIRG
|
|---|
| |