Gene Sama_0228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0228 
SymbolrplF 
ID4602484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp259004 
End bp259537 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content51% 
IMG OID639779549 
Product50S ribosomal protein L6 
Protein accessionYP_926109 
Protein GI119773369 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0097] Ribosomal protein L6P/L9E 
TIGRFAM ID[TIGR03654] ribosomal protein L6, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000431714 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000804298 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTCTCGTG TAGCAAAAGC ACCTGTATCT ATTCCTGCCG GCGTAGAGGT GACCTTAAAT 
GGTCAGGAAA TCACCGTTAA AGGCGGCAAA GGTACTCTGA CTCGCGTAAT CAACAGCGCT
GTTGCAGTGA CTGTTGAAGA TGGCGCTATC AAGTTTGCCC CCGTAGAAGG CGTTGTTAAC
GCCTGGGCTC AAGCTGGTAC TGCCCGCGCT CTTATCAACA ACATGGTTGT TGGTGTATCT
CAGGGTTTTG AGAAGAAGCT GCAGCTGGTT GGTGTAGGTT ATCGTGCCAA AGTGGCCGGT
AGCGACGTCG ATCTGTCTCT GGGTTTTTCT CACCCACTGG TACACAAACT TCCAGCTGGC
GTTACTGCTG AATGCCCAAG CCAAACCGAA ATCGTTCTGC GTTCTATCGA CAAAGAACTG
GTTGGTCAAG TGGCTGCTGA GATTCGTGGC TATCGTCCAC CAGAGCCTTA CAAGGGCAAG
GGTGTTCGCT ACGCTAACGA AGAAGTACGC CGTAAAGAGG CTAAGAAGAA GTAA
 
Protein sequence
MSRVAKAPVS IPAGVEVTLN GQEITVKGGK GTLTRVINSA VAVTVEDGAI KFAPVEGVVN 
AWAQAGTARA LINNMVVGVS QGFEKKLQLV GVGYRAKVAG SDVDLSLGFS HPLVHKLPAG
VTAECPSQTE IVLRSIDKEL VGQVAAEIRG YRPPEPYKGK GVRYANEEVR RKEAKKK