| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0213 |
|---|
| Symbol | rplC |
|---|
| ID | 4602469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 252232 |
|---|
| End bp | 252870 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639779534 |
|---|
| Product | 50S ribosomal protein L3 |
|---|
| Protein accession | YP_926094 |
|---|
| Protein GI | 119773354 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000046877 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000731174 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCG GTCTTATTGG TCGTAAAGTG GGCATGACCC GCATCTTCAC CGAAGATGGC
GTGTCTATCC CTGTTACTGT AATCGAAGTA GAAGCCAACC GCGTAACCCA GGTGAAGACT
CTGGAAAACG ACGGTTATCG CGCACTTCAA GTTACAACTG GTGCCAAAAA AGCCCATCGC
GTTACTAAGC CAGAAGCTGG CCACTTTGCC AAGGCAGGCG TTGAAGCCGG CCGTGGTCTG
TGGGAAATGC GTCTGGGCGA AGGTGAAGGC GAAGGCATTG AAGTTGGTGC TGAGCTGAAT
GTAGAGATCT TCGCTGACGT TCAGAAAGTT GACGTGACTG GTCAATCCAA AGGTAAAGGC
TTCCAGGGCG GTGTTAAGCG CTGGAACTTC CGTACTCAGG ATATGACTCA CGGTAACTCT
TTGTCACACC GCGCTAACGG TTCTATCGGT CAGAACCAGA CGCCAGGTCG TGTATTCAAA
GGCAAAAAGA TGTCAGGTCA CATGGGCGCT GAGCGCGTTA CCACTCAAAA TCTGGACGTA
GTACGTGTAG ATGTTGAGCG TAACCTGCTG CTGGTTAAGG GTGCCGTTCC AGGCGCTACT
AACGGCGACC TGATCATCAA GCCAGCTGTT AAAGCATAA
|
|---|
| Protein sequence | MAIGLIGRKV GMTRIFTEDG VSIPVTVIEV EANRVTQVKT LENDGYRALQ VTTGAKKAHR
VTKPEAGHFA KAGVEAGRGL WEMRLGEGEG EGIEVGAELN VEIFADVQKV DVTGQSKGKG
FQGGVKRWNF RTQDMTHGNS LSHRANGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLDV
VRVDVERNLL LVKGAVPGAT NGDLIIKPAV KA
|
|---|
| |