Gene Sama_0199 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0199 
Symbol 
ID4605915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp233618 
End bp234802 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content52% 
IMG OID639779520 
Productelongation factor Tu 
Protein accessionYP_926080 
Protein GI119773340 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000563397 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000127621 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTAAAG CTAAATTCGA ACGTACTAAA CCCCACGTAA ACGTGGGCAC CATCGGTCAC 
GTTGACCATG GTAAAACCAC TCTGACCGCT GCTATCTCTC ACGTACTGGC TAAGACCTAC
GGTGGTGAGG CGAAGGACTT CTCTCAGATC GATAACGCCC CAGAAGAGCG TGAGCGTGGT
ATTACCATCA ACACCTCTCA CATCGAGTAC GACACTCCTA CTCGTCACTA CGCCCACGTA
GACTGCCCAG GCCACGCTGA CTATGTTAAA AACATGATCA CCGGTGCTGC CCAGATGGAC
GGCGCTATCC TGGTAGTAGC TGCGACTGAC GGCCCAATGC CACAGACTCG TGAGCACATC
CTGCTGTCTC GTCAGGTAGG TGTACCTTTC ATCATCGTGT TCATGAACAA GTGTGACATG
GTAGATGACG AAGAGCTGCT GGAACTGGTA GAGATGGAAG TTCGTGAACT GCTGTCTGAA
TACGACTTCC CAGGTGATGA CCTGCCAGTA ATTCAGGGTT CTGCTCTGAA AGCTCTGGAA
GGCGACGCTG CATGGGAAGG CAAGATCATC GAGCTGGCCG AGGCCCTGGA TTCTTACATC
CCTGAGCCAG AGCGTGCTAT CGACAAAGCA TTCCTGATGC CAATCGAAGA CGTATTCTCT
ATCTCTGGCC GTGGTACAGT AGTAACCGGT CGTGTAGAGC GCGGTATCAT CAAAGTTGGT
GAAGAAGTAG AAATCGTAGG TATCAAAGAT ACCACCAAGA CTACCTGTAC CGGCGTAGAA
ATGTTCCGTA AGCTGCTGGA CGAAGGTCGT GCCGGTGAGA ACTGCGGTAT CCTGCTGCGT
GGTACCAAGC GTGATGAAGT AGAGCGTGGT CAGGTTCTGT CCAAGCCAGG CACCATCAAG
CCACACACCA AGTTTGAATC AGAAGTATAC GTACTGTCTA AAGAAGAAGG TGGTCGTCAC
ACTCCATTCT TCAAAGGCTA CCGTCCACAG TTCTACTTCC GTACAACTGA CGTGACCGGT
ACCATCGAAC TGCCAGAAGG CGTAGAGATG GTAATGCCAG GCGACAACAT CAAGATGGTT
GTTACCCTGA TTTGCCCAAT CGCGATGGAC GAAGGCCTGC GCTTCGCTAT CCGTGAAGGC
GGCCGCACAG TAGGTGCTGG TGTAGTAGCC AAGATCCACG AGTAA
 
Protein sequence
MAKAKFERTK PHVNVGTIGH VDHGKTTLTA AISHVLAKTY GGEAKDFSQI DNAPEERERG 
ITINTSHIEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVAATD GPMPQTREHI
LLSRQVGVPF IIVFMNKCDM VDDEELLELV EMEVRELLSE YDFPGDDLPV IQGSALKALE
GDAAWEGKII ELAEALDSYI PEPERAIDKA FLMPIEDVFS ISGRGTVVTG RVERGIIKVG
EEVEIVGIKD TTKTTCTGVE MFRKLLDEGR AGENCGILLR GTKRDEVERG QVLSKPGTIK
PHTKFESEVY VLSKEEGGRH TPFFKGYRPQ FYFRTTDVTG TIELPEGVEM VMPGDNIKMV
VTLICPIAMD EGLRFAIREG GRTVGAGVVA KIHE