| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0171 |
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| Symbol | |
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| ID | 4602427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 201935 |
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| End bp | 203158 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779482 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_926052 |
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| Protein GI | 119773312 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCTT TTGAATACAA GGCGCTCGAT GGCAAGGGCA AACAGCAAAA AGGGGTGATT
GAGGCAGACA GTGCCCGTCA TGCCCGCAGT CAGCTGCGCG ATATGCGTCT GATGCCGCTG
GAAATCGAAC CTGTTGTCGA AAAGGAAACC AAGGCCAAAT CCGTTGGCTT CAGCCCCTTC
AAGCGGGGGA TCAGTGTGGC CGAGCTGGCA TTGATCACCC GTCAGATTGC CACCCTGGTG
GCCTCTGGCT TACCGGTGGA AGAAGCCCTC AAGGCAGTGG GCCAGCAGTG TGAAAAAGAC
CGTCTCGCTT CCATGGTGAT GGCGGTGCGC TCTCGGGTGG TGGAAGGCTA TTCTCTTGCC
GACTCCATGG CCGAATTCCC TCATATTTTT GATGATTTGT ATCGCTCTAT GGTGGCCTCG
GGTGAAAAAT CCGGTCATCT GGAAGTGGTG CTCAATCGTC TGGCCGATTA CACCGAGCGG
CGTCAGCAGC TCAAGTCCAA ACTGACCCAA GCCATGATTT ACCCTGTGAT GCTGACCTTG
GTGGCCATTG GCGTGGTCGC CGTGTTGCTT GCGGCCGTGG TACCCAAGGT GGTGTCTCAG
TTTGAACATC TGGGGCAGGA GTTGCCTGCG ACCACTAAGG CCCTGATGGC ATCGTCAGCC
TTTGTGCAGG ACTATGGCTT GTTAATTATG GTCTTGGTCG TGGTCGCCTT TGTGGTGTTT
CAGCGTTTGC TCGCCAACGA CAACTTCAAG ATGAAGTACC ATCAGTTTCT GCTGCGTCTG
CCGGTGGTTG GCCGGGTCAG TCGCAGCATC AACACGGCCC GCTTTGCCCG CACCCTGAGT
ATTCTCAGTG CCAGTGCCGT GCCGCTGCTG GATGGGATGC GTATCGCCGG AGAGGTGATG
CAGAACTTAA GGGTGCGCGA AGCGGTCGAA GAAGCAACGG CCCGAGTGCG CGAGGGGACC
AGCCTGGGGG CGGCCCTGAC CAACACCAAG CTGTTTCCGC CCATGATGCT CTATATGATT
GCCTCGGGCG AAAAGAGCGG TCAGCTCGAA AACATGCTCG AGCGTGCTGC GGATAATCAG
GACAGGGAAT TTGAGGCCAA TGTGAATCTG GCGCTGGGGG TATTTCAACC GGCGCTGGTG
ATCAGCATGG CTGCGGTGGT GCTCTTTATC GTACTCGCCA TCCTGCAACC TATTCTGGAA
ATGAACAATT TGATTGGTGG CTAA
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| Protein sequence | MPAFEYKALD GKGKQQKGVI EADSARHARS QLRDMRLMPL EIEPVVEKET KAKSVGFSPF
KRGISVAELA LITRQIATLV ASGLPVEEAL KAVGQQCEKD RLASMVMAVR SRVVEGYSLA
DSMAEFPHIF DDLYRSMVAS GEKSGHLEVV LNRLADYTER RQQLKSKLTQ AMIYPVMLTL
VAIGVVAVLL AAVVPKVVSQ FEHLGQELPA TTKALMASSA FVQDYGLLIM VLVVVAFVVF
QRLLANDNFK MKYHQFLLRL PVVGRVSRSI NTARFARTLS ILSASAVPLL DGMRIAGEVM
QNLRVREAVE EATARVREGT SLGAALTNTK LFPPMMLYMI ASGEKSGQLE NMLERAADNQ
DREFEANVNL ALGVFQPALV ISMAAVVLFI VLAILQPILE MNNLIGG
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