| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0170 |
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| Symbol | |
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| ID | 4602426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 200369 |
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| End bp | 201931 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779481 |
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| Product | general secretion pathway protein E |
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| Protein accession | YP_926051 |
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| Protein GI | 119773311 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA TCAATCAGGG CGAAGTGCTG GAACGCCTGT CCGATGAACT TGGCGTAGAG
GCCGAGACCC AGGTAGACGA GGCGTTTCGC TCCAATAGCC GCGAGCGACT GCCCTTTGCC
TTTGCCCACC GTTTTGGCTT GGTGCTCGCC AAAGACGAAC AGGGTGTGCT GGGGCTGTAT
TACACAGACA AAACACCGCT GGCCGCCTTG TTGGAAGTGC GCCGCTACGC CGGTGAAGCC
GTGCCATTGC AACGACTGGA AGCTTCGGCC TTCGAGGCCA GACTGACCCA GGCGTATCAG
GCCAATTCTT CTGAAGCGCA GCAGCTGATG GAAGATATTG GCAATGAGAT GGACCTCTTC
ACCCTGGCCG AAGAGCTGCC TCAGACCGAA GATCTGCTGG AAGGCGACGA TGATGCGCCC
ATTATCCGGC TTATCAACGC GCTCCTGTCG GAAGCCATTA AAGAAGAGGC GTCGGACATC
CACATCGAGA CTTACGAGAA GCAGCTCGTG GTGCGTTTCC GGGTGGATGG GGTGCTCAAA
GAAGTGCTCA AACCCAACCG TAAGCTTTCG TCACTGCTGG TCAGCCGTAT CAAGGTAATG
GCTCGTCTGG ACATCGCAGA AAAACGCGTG CCACAGGATG GCCGTATCTC ATTGCGTATC
GGTGGCCGAG CCGTGGATGT GCGGGTGTCG ACCATGCCAT CGAGCCACGG TGAACGGGTG
GTACTGCGTC TGCTCGATAA AAATGCCGGT AATCTGGATT TGGCTCAGCT TGGGATGACT
GAAACCATTC GCGAGCAATT CGATGAGCTT ATCCGCAAGC CCCACGGTAT CCTGCTGGTG
ACTGGTCCTA CAGGTTCGGG TAAGAGTACG ACTCTCTACG CGGGCCTCAC CGAAATCAAT
TCCCGTGACA CCAACATTCT CACGGTGGAA GACCCCATCG AATATGAGCT CGAAGGTATA
GGTCAAACCC AGGTCAACAC CAAGGTCGAC ATGACTTTTG CCCGCGGCCT GCGTGCCATT
TTGCGTCAGG ACCCTGATGT GGTGATGATT GGGGAAATCC GGGACCTGGA AACGGCTCAA
ATCGCGGTGC AGGCGTCCCT TACGGGTCAC CTGGTGATTT CTACTCTGCA CACCAACACT
GCATCCGGTG CTATTACTCG ATTGCAGGAT ATGGGGGTTG AGCCCTTCCT GGTGTCGTCC
AGTTTGCTCG GTGTATTGGC CCAGCGACTG GTACGGACCC TGTGCCCAAG CTGTAAGGCG
CCCCATGTGC CCGATGAGCG AGAGCGTGAA CTGCTGGGTA TTGGCGGTGG TGATGCGGTT
ATCTACCGCG CCACCGGCTG TAAGGCCTGT GGCCATAATG GTTATCGCGG TCGTACCGGT
ATCCACGAGC TGCTGTTGGT GGATGACACT GTGCGTGAAC TTATCCATGG TGGCAGGGGC
GAGCTGGCGA TTGAGAAATA CATTCGTCAA TCGGTTCCCA GCATTCGCCA CGATGGTATG
CAAAAGGTCC TGGCGGGCAT TACCACCCTC GAAGAAGTAC TGCGGGTGAC CCGCGAGGAG
TAA
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| Protein sequence | MSDINQGEVL ERLSDELGVE AETQVDEAFR SNSRERLPFA FAHRFGLVLA KDEQGVLGLY
YTDKTPLAAL LEVRRYAGEA VPLQRLEASA FEARLTQAYQ ANSSEAQQLM EDIGNEMDLF
TLAEELPQTE DLLEGDDDAP IIRLINALLS EAIKEEASDI HIETYEKQLV VRFRVDGVLK
EVLKPNRKLS SLLVSRIKVM ARLDIAEKRV PQDGRISLRI GGRAVDVRVS TMPSSHGERV
VLRLLDKNAG NLDLAQLGMT ETIREQFDEL IRKPHGILLV TGPTGSGKST TLYAGLTEIN
SRDTNILTVE DPIEYELEGI GQTQVNTKVD MTFARGLRAI LRQDPDVVMI GEIRDLETAQ
IAVQASLTGH LVISTLHTNT ASGAITRLQD MGVEPFLVSS SLLGVLAQRL VRTLCPSCKA
PHVPDERERE LLGIGGGDAV IYRATGCKAC GHNGYRGRTG IHELLLVDDT VRELIHGGRG
ELAIEKYIRQ SVPSIRHDGM QKVLAGITTL EEVLRVTREE
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