Gene Sama_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0100 
Symbol 
ID4602357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp113051 
End bp114313 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content57% 
IMG OID639779412 
Product3-deoxy-D-manno-octulosonic-acid (KDO) transferase 
Protein accessionYP_925982 
Protein GI119773242 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1519] 3-deoxy-D-manno-octulosonic-acid transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.014553 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.01805e-05 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCTCGAT TGCTCTATTC AGTTCTCTTA TACCTGCTGT CGCCACTCTT GGTACTTTAT 
CTGGCCCAGC GTGCCATAAA GAGCCCGGAT TATCGTGGTC GCTGGGGCGA GCGGTTTGGC
CTTAAGGCGC TGATGCCTAC CGACATACTG ATCCATTCTG TCTCCATGGG CGAGACGCTC
GCAGCCATAC CACTCATTCG CGCTATCATG GCGGCCAGGC CAAATCTGCG GATCACGGTT
ACCACGTCAA GCCCCACGGG CTCGGCAGAA GTTATCAAGG CCTTTGGCGA CCGGGTACAA
CATTGTTATT TACCCTTTGA CCTGGGGTTT GCCGTTAACC GCTTTTTGAG CCAATTGGGC
TGCGCCGAGC TTATCATCAT GGAAACCGAG CTGTGGCCAA ACCTCATTGC CGGGGCCAGG
GCTCGGGGCA TCAAGGTATC TTTGCTCAAT GCCCGTTTGT CAGAAAAATC CGCCGCCAGT
TATCAAAAGT TCGCATCCCT CACTGTGCCC ATGCTCAGGT CGCTGGACCA GATTGCGGTG
CAAACGACCA AAGAAGCAGA ACGTTTTGTC GCACTTGGCG TGGATGCCTC GCGGGTACAT
GTGTGTGGTA GTTTGAAGTT TGATATCCAG ATCCCCCCAT CCCGCCGTGA ATCGGCGCGG
CAGTTGCGGC AGAGTTGGGG ACGGGACGAC CACTTGATAT GGGTGGCGGG CAGCGTACAT
CCCGGTGAAT TCGATACCAT GCTCAGCGCC CATCACCAAC TACTTGAGCA GTTTCCAGAC
GCGCTGCTGA TTATGGTGCC AAGGCATCCT GAGCAGTTTG CCAACGCTGC ACGGGCCATA
CGTGAGAGAG GCTTACAGCT GGCCGTTCGC AGTATGGGAG AGGCGCCGAC AGTGGGCACG
CAGGTGCTCC TTGGCGACAC CATGGGCGAG CTCTTGACCT GGTACGGCGC TGCCGATCTG
GCCTTTGTGG GCGGTACACT GGTGGTCAAT GGCGGCCACA ATCCGCTGGA GCCTGCGGCC
ATGGGGTTAC CGGTTGCCAT GGGACCCAAC CATTGGGATT TTAAAGAAAT TACCGAACTT
CTGCAGCAGG CGGGTAATCT CACCCTGTGT GCTACCCCGG ACGCCTTTAA CGACTGGTTG
TTGGCGACTG CACAGGATTC GGTTGGCCGC CTGACCGCCG GTGAGGCTGG GTTAAGAGTC
GTGGAGAGCA ATCGTGGGGC GCTGAGTCGT CAACTGGCGG TATTGGGTTA CGCAGCAGCG
TAA
 
Protein sequence
MARLLYSVLL YLLSPLLVLY LAQRAIKSPD YRGRWGERFG LKALMPTDIL IHSVSMGETL 
AAIPLIRAIM AARPNLRITV TTSSPTGSAE VIKAFGDRVQ HCYLPFDLGF AVNRFLSQLG
CAELIIMETE LWPNLIAGAR ARGIKVSLLN ARLSEKSAAS YQKFASLTVP MLRSLDQIAV
QTTKEAERFV ALGVDASRVH VCGSLKFDIQ IPPSRRESAR QLRQSWGRDD HLIWVAGSVH
PGEFDTMLSA HHQLLEQFPD ALLIMVPRHP EQFANAARAI RERGLQLAVR SMGEAPTVGT
QVLLGDTMGE LLTWYGAADL AFVGGTLVVN GGHNPLEPAA MGLPVAMGPN HWDFKEITEL
LQQAGNLTLC ATPDAFNDWL LATAQDSVGR LTAGEAGLRV VESNRGALSR QLAVLGYAAA