| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0097 |
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| Symbol | tdh |
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| ID | 4602354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 109791 |
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| End bp | 110816 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779409 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_925979 |
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| Protein GI | 119773239 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0317813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00132916 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCAC TTGCTAAACT CAAGCCTGAA GAAGGCATTT GGATGGTTGA TGCCCCCAAG
CCGGAAATGG GCCATAACGA TCTGCTGATT AAGATCCGTA AAACCGCCAT TTGTGGCACC
GACGTGCATA TCTACAACTG GGACGAGTGG TCGCAAAAAA CCATTCCCGT GCCTATGGTA
GTAGGTCACG AATATGTCGG CGAAGTGGTG GGAATTGGCC AGGAAGTCCG CGGCTTCAAG
ATTGGCGACC GCGTATCCGG TGAAGGCCAT ATCACCTGTG GCCATTGCCG TAACTGCCGC
GCCGGCCGCA CTCATCTGTG CCGCAATACC ACGGGCGTGG GTGTAAACCG TGAAGGCTCA
TTCGCCGAGT ATCTGGTGAT CCCAGCCTTT AACGCGTTCA AAATCCCCGA TGATATCAGT
GACGATCTGG CTGCCATTTT TGACCCATTC GGTAATGCCG TTCACACGGC GCTGTCATTC
GACCTGGTAG GGGAAGACGT GCTTATCACA GGCGCCGGCC CCATCGGTAT CATGGCTGCT
GCCGTGTGCC GTCACGTGGG CGCCCGCCAT GTGGTGATCA CCGACGTGAA CGAATATCGT
CTGGAACTGG CTCGAAAGAT GGGTGCTACC CGTGCGGTGA ACGTGGCCAA GGAAAACCTC
AAAGACGTGA TGAAAGACCT CGGCATGACC GAAGGCTTCG ACGTTGGCCT GGAAATGTCC
GGCGTACCTG CCGCCTTCCA TGCCATGCTG GATACCATGA ACCACGGCGG CAAAATCGCC
ATGCTGGGTA TTCCCGGCGG CGAAATGGCC ATCGACTGGA GCAAGGTGAT CTTCAAGGGA
CTCATCATCA AGGGCATCTA CGGCCGTGAA ATGTTTGAGA CCTGGTACAA GATGGCCAGC
CTGCTGCAAT CGGGCCTGGA CTTGTCCCCC ATTGTTACCC ACCACTTCAA GGTGGACGAC
TTCCAGCAAG GCTTCGACGC CATGCGTTCC GGTCAGTCCG GTAAAGTCAT CCTCAGCTGG
GATTAA
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| Protein sequence | MKALAKLKPE EGIWMVDAPK PEMGHNDLLI KIRKTAICGT DVHIYNWDEW SQKTIPVPMV
VGHEYVGEVV GIGQEVRGFK IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT TGVGVNREGS
FAEYLVIPAF NAFKIPDDIS DDLAAIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELARKMGAT RAVNVAKENL KDVMKDLGMT EGFDVGLEMS
GVPAAFHAML DTMNHGGKIA MLGIPGGEMA IDWSKVIFKG LIIKGIYGRE MFETWYKMAS
LLQSGLDLSP IVTHHFKVDD FQQGFDAMRS GQSGKVILSW D
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