Gene Sama_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0094 
Symbol 
ID4602351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp107836 
End bp108489 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content53% 
IMG OID639779406 
Productisoprenoid biosynthesis protein with amidotransferase-like domain 
Protein accessionYP_925976 
Protein GI119773236 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.08389e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0160818 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATA TCGCAGTACT CTTGGCGGGC TGTGGTGTCT TTGACGGCAG CGAAATTCAT 
GAATCGGTAC TGACCTTGTT GTCCCTGACC AAGGCCGGTG CCCGTTTTCA GTGTTTTGCA
CCGGATATTC CCCAGCTGCA TGTGGTCAAT CATCTGTCCG GTGAGGTGGC AAAAGACGAA
CATCGCAACG TGTTGGTTGA GGCTGCGCGC ATTGCCCGGG GCGACATTAA GGCCACCACA
GAGTTAAATG TGGCCGACTT CGATGCGTTG ATTATCCCCG GTGGTTTTGG TGCGGCAAAA
AACCTGTGCA ATTTCGCTCT GGTAGGCGCG GATTGCGACG TGGCACCCGA GGTGCGTGAC
TTTATTGCTG AGTTCGCCCT GTCGAAAAAG CCGGTAGGCT TTATCTGTAT TGCACCTGTG
ATGATCCCCA AGCTCTACGG TAAGGGCGCC ATCGGTACTA TTGGTCACGA CAAGGGGACC
AGTGAAGCTT TTTGTATCAT GGGCGGTGAT CATCGGGATG CGTCAGTACA CGAGATTGTG
GTGGACGAGG CTAACAAGAT AGTGAGCACT CCGGCATATA TGTTGGCAGG CAACATCGCC
GAGGCGCATT CCGGCATCGA AAAGCTGGTC AACAAAGTAC TGGCGATGGC CTGA
 
Protein sequence
MKNIAVLLAG CGVFDGSEIH ESVLTLLSLT KAGARFQCFA PDIPQLHVVN HLSGEVAKDE 
HRNVLVEAAR IARGDIKATT ELNVADFDAL IIPGGFGAAK NLCNFALVGA DCDVAPEVRD
FIAEFALSKK PVGFICIAPV MIPKLYGKGA IGTIGHDKGT SEAFCIMGGD HRDASVHEIV
VDEANKIVST PAYMLAGNIA EAHSGIEKLV NKVLAMA