Gene Sama_0093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0093 
Symbol 
ID4602350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp104678 
End bp107449 
Gene Length2772 bp 
Protein Length923 aa 
Translation table11 
GC content55% 
IMG OID639779405 
ProductDNA-directed DNA polymerase 
Protein accessionYP_925975 
Protein GI119773235 
COG category[L] Replication, recombination and repair 
COG ID[COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains 
TIGRFAM ID[TIGR00593] DNA polymerase I
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00183207 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0262318 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGATA TTGCCAGCAA CCCGCTCATC CTTGTGGATG GTTCTTCCTA TCTTTATCGC 
GCCTATTATG CACCCCCACA TCTAACCAAT TCCAAGGGCG AAGCCACTGG TGCCGTTTAT
GGTGTGGTTA ACATGCTGCG CAGTCTGCTG TCCCGCTACC GCCCAACGCA AATGGCGGTG
GTATTTGATG CCAAGGGCCC CACATTCCGC AATGAAATGT ATCAGGAATA CAAAGCCCAT
CGCCCTCCCA TGCCGGACGA CCTGCGCAGC CAGATTGCGC CGCTGCACCG TATTATCAAG
GCTCTGGGCA TTCCCCTTAT CAGCATTCCC GGCGTAGAAG CCGACGACGT GATTGGTACT
ATTGCCATTC AGGCCGGGAA CGAAGGCCGC AGCGTGCTCA TCAGCACCGG CGACAAAGAC
ATGGCGCAGC TGGTTAATGA ACACATCACG CTTATTAACA CCATGACCGA CACCATACTT
GGCCCAGAAG AAGTGGCCAC TAAGTTTGGT GTGGGGCCAG AGTTGATTAT CGATCTGCTG
GCGATGATGG GCGATAAAGC AGATAACATT CCAGGCCTGC CAGGAGTGGG AGAGAAAACC
GCACTCGCCA TGCTGACCGG TGCCGGTGGC GTAGCTAAAC TGCTCGCCGA GCCGGACTGC
GTTACAGACC TGGGCTTTCG CGGCGCCAAA ACCATGGCAG CCAAAATCCG TGACAATGCC
GAAATGCTGG AGCTGTCTTA CAAGCTCGCC ACCATTAAAA CGGATGTGAC ACTTGAGCAG
GATTGGCATC AGTTGTCTCT CAGCGAGCCG AACCGCGACG AGCTCATCGC CTGCTACGGT
GAGATGGAGT TCAAGCGCTG GCTGGCGGAA GTGCTGGACA ACAAGTCGCC TTTGGGCACC
AAAGCAGCTG CGCCGCAGGC AAATCAGGAG ACTACCGAAT CACCAGCCGC TGCCGTCATC
GAAACCCAAT ACCACACCCT GCTGACCGAA TCTGAACTGG ATGCCTGGCT CGATAAGCTG
AGTAAAGCCG AGTTGATTGC TGTGGATACC GAAACTACCA GTCTTGACTA TATGCAAGCC
GAGTTGGTGG GGCTGTCGTT TGCCATCGAA GCCGGTAAGG CCGCTTACTT GCCATTGGGG
CACGACTATC CCGGCGCACC GTCCCAATTG CCGCGCGAAG CGACTCTCGC CAAGCTCAAG
CCGCTGCTTG AAAATCCGGA CATTAAAAAA GTTGGTCAAA ACCTTAAGTA CGATATGAGC
GTGCTGGCCA ATGCTGGTAT CCAGCTGAAA GGCGTCGCCT TCGATACCAT GCTTGAATCT
TACGTATTCA ACTCAGTGGC CAGCCGCCAC GACATGGACG GACTGGCACT CAAGTATCTG
GGGCATAAAA ATATCAGCTT TGAAGAGATC GCCGGCAAAG GTGCCAAACA ACTCACCTTC
AACCAAATCG CACTTGAACA AGCTGCCCCC TATGCGGCGG AAGACGCCGA TATCACCTTA
AGACTGCATC AACATCTATG GCCGCGCCTC AGCAAAGAAG AGGGTCTCGA GTCCGTGTTT
ACCGAACTCG AGCTGCCGCT GATTGAGGTA CTGTCAGATA TTGAACGTCG CGGCGTACTC
ATTGACAGTA TGCTGCTTGG GCAGCAGAGT GAAGAACTGG CGCGCAAGAT TGACGAGCTT
GAACAACACG CACACGAAAT TGCCGGTGAA CCCTTTAACC TGTCGTCCAC CAAGCAGTTG
CAGGAGCTGT TTTTCACCAA GCTGGGTTAT CCGGTCATTA AAAAAACTCC CAAGGGTGCC
CCTTCCACCG CCGAAGAAGT GCTGGTTGAA TTGGCGCTTG ACTACCCACT GCCCAAAATC
ATCCTTGAGC ACCGCAGTCT CACCAAGCTC AAGAGCACTT ATACCGACAA ATTGCCGCTG
ATGATCAATG GCCGTACCGG TCGTGTGCAC ACCAGCTACC ATCAGGCCAA TGCCGCTACA
GGTCGCCTGT CGTCCAGCGA CCCGAACCTG CAGAATATTC CGATTCGCAC CGAAGAAGGC
CGTCGTATCC GTCAAGCCTT TGTGGCGCCC GAAGGCAAAC GCATTCTGGC GGCGGACTAT
TCCCAGATTG AACTCAGGAT CATGGCGCAT CTGTCTCAGG ATGAGGGCTT GCTGCGCGCT
TTTGCCGAAG GCAAAGACAT TCACCGCGCC ACTGCCGCCG AAGTATTTGA TGTGGCATTT
GAAACAGTGA CATCAGAGCA ACGCCGCCGC GCCAAAGCGG TGAACTTCGG CCTTATATAC
GGCATGTCGG CCTTCGGCCT GGCCCGTCAG CTGGATATTC CCCGCAACGA GGCCCAAAGC
TATATCGATA CCTACTTCAA GCGCTACCCT GGCGTACTCA AATACATGGA GGAGACACGC
GCCATGGCTT CTGAGCAGGG TTATGTCAGT ACCCTGTTTG GCCGTCGCCT CTATTTGCCG
GAAATCCGTG ACCGTAATGC CATGCGCAGG CAGGCTGCAG AACGTGCCGC CATTAACGCG
CCCATGCAGG GTACGGCTGC AGACATCATC AAGAAGGCGA TGATTGCGAT CCAGCATTGG
ATTAAGACCG AGACTCAGGG CGAAATCCAG ATGATTATGC AGGTGCACGA TGAACTGGTA
TTCGAGGTGG ATGCCGATAA GGCCGATGCC CTGAAAGAGA AGGTATGCGA GTTGATGGCT
GCGGCGGCAA GCCTCGATGT GCCATTGCTG GCCGAAGCCG GTCTGGGTGA TAACTGGGAT
CAGGCCCACT GA
 
Protein sequence
MPDIASNPLI LVDGSSYLYR AYYAPPHLTN SKGEATGAVY GVVNMLRSLL SRYRPTQMAV 
VFDAKGPTFR NEMYQEYKAH RPPMPDDLRS QIAPLHRIIK ALGIPLISIP GVEADDVIGT
IAIQAGNEGR SVLISTGDKD MAQLVNEHIT LINTMTDTIL GPEEVATKFG VGPELIIDLL
AMMGDKADNI PGLPGVGEKT ALAMLTGAGG VAKLLAEPDC VTDLGFRGAK TMAAKIRDNA
EMLELSYKLA TIKTDVTLEQ DWHQLSLSEP NRDELIACYG EMEFKRWLAE VLDNKSPLGT
KAAAPQANQE TTESPAAAVI ETQYHTLLTE SELDAWLDKL SKAELIAVDT ETTSLDYMQA
ELVGLSFAIE AGKAAYLPLG HDYPGAPSQL PREATLAKLK PLLENPDIKK VGQNLKYDMS
VLANAGIQLK GVAFDTMLES YVFNSVASRH DMDGLALKYL GHKNISFEEI AGKGAKQLTF
NQIALEQAAP YAAEDADITL RLHQHLWPRL SKEEGLESVF TELELPLIEV LSDIERRGVL
IDSMLLGQQS EELARKIDEL EQHAHEIAGE PFNLSSTKQL QELFFTKLGY PVIKKTPKGA
PSTAEEVLVE LALDYPLPKI ILEHRSLTKL KSTYTDKLPL MINGRTGRVH TSYHQANAAT
GRLSSSDPNL QNIPIRTEEG RRIRQAFVAP EGKRILAADY SQIELRIMAH LSQDEGLLRA
FAEGKDIHRA TAAEVFDVAF ETVTSEQRRR AKAVNFGLIY GMSAFGLARQ LDIPRNEAQS
YIDTYFKRYP GVLKYMEETR AMASEQGYVS TLFGRRLYLP EIRDRNAMRR QAAERAAINA
PMQGTAADII KKAMIAIQHW IKTETQGEIQ MIMQVHDELV FEVDADKADA LKEKVCELMA
AAASLDVPLL AEAGLGDNWD QAH