Gene Sama_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0090 
Symbol 
ID4602347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp100859 
End bp101539 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content51% 
IMG OID639779402 
Producthypothetical protein 
Protein accessionYP_925972 
Protein GI119773232 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.69669e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.185327 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGTT GCCCCCTGTG CCTCAAGCTG GACACCCAGT TATTTCATCA GGACAAAAAA 
CGCAGTTTCC ATCACTGTGC CACATGTGGA ATGGTGTTTG CCGACGGTGC AACACATTTG
CCGCCTCAAG CGATTCGTCA GCGTTACGGG CGCGGTGGCA CCCAGGATAA TCAGCGCCAG
CTATCGCCGT TTTTATTGTC ATTGCTTGAA CAAATCACCA GCCTGCATGG TACAGAGGTG
CGGGGATTAA ACTACGGTCG GGTATTGGAT ACAGAGAGTC ACTGGCAACT TAATTCCGCT
GGCCATGAGC TCAGCCAGTA CGACCCTTTT ACCGCGCCTG ATCCCGAAGC CCTGCAAAGC
CAATACGACT TTATATGCTG TTTCAGGGTG TTCGAACATT TTGCTGCCCC CCACCGGGAA
TGGCAGCTCT TTAACCGCTT ACTCAAAGCC GGTGGTTTTT TGGCCATCAG CACCAGGATG
CTGACCAACC CATCACGCTT TGATAAATGG CACCATAAAA ATAACCCTGC CCATGTCAGC
TTTCCCTGTC GGGAAACCTT CGAATATTTG GCTGCTGACA GTGGCTTTCG GCTAATATTT
GCCGAAAATG ACTTCATCCT GATGCAAAAA CCATCGGGAT CTGATATAAA ACGCGACCCA
AATTCATGCC CTGCCCTGTG A
 
Protein sequence
MRRCPLCLKL DTQLFHQDKK RSFHHCATCG MVFADGATHL PPQAIRQRYG RGGTQDNQRQ 
LSPFLLSLLE QITSLHGTEV RGLNYGRVLD TESHWQLNSA GHELSQYDPF TAPDPEALQS
QYDFICCFRV FEHFAAPHRE WQLFNRLLKA GGFLAISTRM LTNPSRFDKW HHKNNPAHVS
FPCRETFEYL AADSGFRLIF AENDFILMQK PSGSDIKRDP NSCPAL