Gene Sama_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0076 
Symbol 
ID4602333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp81833 
End bp82699 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content57% 
IMG OID639779388 
Producttranscription activator, effector binding 
Protein accessionYP_925958 
Protein GI119773218 
COG category[L] Replication, recombination and repair
[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins
[COG3449] DNA gyrase inhibitor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGACTG GACTGGACCC AAGACTTGCA AGGGTGTGTG ACTACATCAG CCGCCATCTG 
GATGAAGAAC TCAGCCTCGA GCGTTTGAGC CGGGTGGGAC ACTTGTCGCG ATTTCACTTT
CATCGGCTGT TTGCAGCCGG GCTTGGCATT CCGCTGGGGC GCTTTGTGCA GCTGCAACGG
CTGAAACGGG CGTCGTTCCG CCTTGGGTTC GAGCATTCAT TGCGGGTGCT CGATATCGCG
TTGGAGGCCG GGTTCGATAG CGCCGAGGCC TTCAGCCGCG CTTTTAAGCG TGAGCTTGGT
CTCAGCCCTT CGGCATTTCG ACAAACACCT GACTGGGTGC TGTTGCACTC GGTGATGGAG
CTTATCAAGG TGCCCCAGCG AGGGTTAACA GGAGCCAACA TGGACATAAA ATTGATTGAG
ATGCCGAGCC TGTCAGTGGC CTGGCTGGAA CATCAGGGTA ATCCGGCGCG GGTGCTGGAT
ACCAGTGCCC GTTTTATCGA ATGGCGCAAG CAAACCGGGC TGTCACCTAT AGCCAGCTCG
CGCACCTTTG GCATTCCCAA TGGCGACCCG GCCACCATGC CGGCCCAGGA TTTTCGCTTT
AAGGTAGCGG GCAGTATTAA TGTGCCCGTA CCGGCAAATC CACAGGGCGT GGAAAATGGT
GAAATCGCTG GTGGCCGCTA CGCCGTTATC CGTCATCTTG GCAGCCAGGC GAATATGGAT
ACCAGCATCT ACAGCTTTTT CCGCGACTGG CTGCCCCACA GCGGTGAAAA CGTACGGGAA
GCGCCACTGT TTTTCGAATA CCTGAACTTT GTGCACCAGG TAGACGAGTG CGACCTTATC
ACAGACATTT ATGTGCCACT GAACTAA
 
Protein sequence
MPTGLDPRLA RVCDYISRHL DEELSLERLS RVGHLSRFHF HRLFAAGLGI PLGRFVQLQR 
LKRASFRLGF EHSLRVLDIA LEAGFDSAEA FSRAFKRELG LSPSAFRQTP DWVLLHSVME
LIKVPQRGLT GANMDIKLIE MPSLSVAWLE HQGNPARVLD TSARFIEWRK QTGLSPIASS
RTFGIPNGDP ATMPAQDFRF KVAGSINVPV PANPQGVENG EIAGGRYAVI RHLGSQANMD
TSIYSFFRDW LPHSGENVRE APLFFEYLNF VHQVDECDLI TDIYVPLN