| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0074 |
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| Symbol | |
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| ID | 4602331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 79435 |
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| End bp | 80115 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779386 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein |
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| Protein accession | YP_925956 |
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| Protein GI | 119773216 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4229] Predicted enolase-phosphatase |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01691] 2,3-diketo-5-methylthio-1-phosphopentane phosphatase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTATCA GAGCCATAGT CGTAGACACC GCCGGCACCA CCACGGATCT CAACTTTATT
CAGCAAACCC TGTTCCCTTA CTCCGCCAAA GTCATGGCCG ATTTTCTGCG CGAACATCAG
CACAATCCAT TGGTGGACTA TTGCATCGGC GATGTGCGTG ATATCGCCCT CGAAACCGAT
GCCGACATCG ATCGAGTGGC CGAGATTTTG GTGCAGTGGA TTGCCGAAGA CCGTAAGGTG
ACGCCGCTGA AAACCCTCCA GGGCCTGATT TGGAAGCAGG GTTATGCCAA CGATGAGTTC
AAGGGACACA TTTACCCTGA CTTTATCGAT GCCATAAAAA CCTATCGTGC CCAGGGTTTA
CGGGTCTACA GCTTTTCTTC AGGCTCAGTG GATGCCCAAA AGCTGCTGTT CAGCCACAGC
GACAGCGGCG ATCTGACCGA GTTGTTCAAT GGCCACTTCG ATACCCGCAC CGGCAACAAG
CTCGACAAAC AGGCCTATGC CAACATTGTT AACACCATCA GCCTGACACC AAGGCAGATC
CTCTTTGTTT CCGATGTGGT TGAAGAGCTG AAAGCCGCCG AAGCCGCTGG CATGATCACG
TGCCAAATGG TGCGCGAACC CTCTCAGCGC ACCGGTAAGT ACCGGATTAT TCAGAGCTTC
AGCGAACTTA ATTTCGAATA A
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| Protein sequence | MGIRAIVVDT AGTTTDLNFI QQTLFPYSAK VMADFLREHQ HNPLVDYCIG DVRDIALETD
ADIDRVAEIL VQWIAEDRKV TPLKTLQGLI WKQGYANDEF KGHIYPDFID AIKTYRAQGL
RVYSFSSGSV DAQKLLFSHS DSGDLTELFN GHFDTRTGNK LDKQAYANIV NTISLTPRQI
LFVSDVVEEL KAAEAAGMIT CQMVREPSQR TGKYRIIQSF SELNFE
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