Gene Sama_0074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0074 
Symbol 
ID4602331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp79435 
End bp80115 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content52% 
IMG OID639779386 
ProductHAD-superfamily hydrolase, subfamily IA, variant 1 family protein 
Protein accessionYP_925956 
Protein GI119773216 
COG category[C] Energy production and conversion 
COG ID[COG4229] Predicted enolase-phosphatase 
TIGRFAM ID[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01691] 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTATCA GAGCCATAGT CGTAGACACC GCCGGCACCA CCACGGATCT CAACTTTATT 
CAGCAAACCC TGTTCCCTTA CTCCGCCAAA GTCATGGCCG ATTTTCTGCG CGAACATCAG
CACAATCCAT TGGTGGACTA TTGCATCGGC GATGTGCGTG ATATCGCCCT CGAAACCGAT
GCCGACATCG ATCGAGTGGC CGAGATTTTG GTGCAGTGGA TTGCCGAAGA CCGTAAGGTG
ACGCCGCTGA AAACCCTCCA GGGCCTGATT TGGAAGCAGG GTTATGCCAA CGATGAGTTC
AAGGGACACA TTTACCCTGA CTTTATCGAT GCCATAAAAA CCTATCGTGC CCAGGGTTTA
CGGGTCTACA GCTTTTCTTC AGGCTCAGTG GATGCCCAAA AGCTGCTGTT CAGCCACAGC
GACAGCGGCG ATCTGACCGA GTTGTTCAAT GGCCACTTCG ATACCCGCAC CGGCAACAAG
CTCGACAAAC AGGCCTATGC CAACATTGTT AACACCATCA GCCTGACACC AAGGCAGATC
CTCTTTGTTT CCGATGTGGT TGAAGAGCTG AAAGCCGCCG AAGCCGCTGG CATGATCACG
TGCCAAATGG TGCGCGAACC CTCTCAGCGC ACCGGTAAGT ACCGGATTAT TCAGAGCTTC
AGCGAACTTA ATTTCGAATA A
 
Protein sequence
MGIRAIVVDT AGTTTDLNFI QQTLFPYSAK VMADFLREHQ HNPLVDYCIG DVRDIALETD 
ADIDRVAEIL VQWIAEDRKV TPLKTLQGLI WKQGYANDEF KGHIYPDFID AIKTYRAQGL
RVYSFSSGSV DAQKLLFSHS DSGDLTELFN GHFDTRTGNK LDKQAYANIV NTISLTPRQI
LFVSDVVEEL KAAEAAGMIT CQMVREPSQR TGKYRIIQSF SELNFE