| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0052 |
|---|
| Symbol | |
|---|
| ID | 4602309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 54060 |
|---|
| End bp | 54896 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639779361 |
|---|
| Product | shikimate dehydrogenase |
|---|
| Protein accession | YP_925934 |
|---|
| Protein GI | 119773194 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0642399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0742475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTGTT TATCCATGAC AGACAGATTC GCCGTATTTG GTAATCCCAT AAGCCACAGT
AAGTCGCCAC AAATTCATGC CATGTTTGCC AAAGAAACAG GGCAGACCCT CACTTATGAG
GCAATTCTGG CGCCACTGGA TGGCTTTGCC GAAGCCGTGA CTGCGTTTAT GGCAGCAGGC
GGATGTGGGG CGAATGTGAC CGTGCCTTTT AAAGAGCAGG CCTTTACTCT GTGCGATGAG
CTCAGTGATG ACGCCCGCAT TGCAGGTGCG GTCAATACCT TGATAAAGCT GCCGGATGGA
CGCCTTCGGG GTGACAACAC CGACGGCATG GGGCTGGTGG CGGATTTAAT CCGGCATGGT
GTTGAGTTAA ATAATAAGCG AGTGCTTTTG GTGGGTGCCG GTGGTGCTGC CCGCGGTGCG
TTATTGCCGC TCGTTCGTGC GGGTGCCAAG CTGACCATCA GCAACCGCAC CTTGAGCAAA
GCTGAGGCCC TGGCAGCATT GTGTCCTAAG GTTAATGTCG AGGTTATTTC AGGCAGTCAT
ATCCGTAGCC CCTTTGATGT GATTATTAAT TCAACATCTG CGAGCCTCAG CGGTGACCTG
CCAGTAATAG CTGCTAACGC CATCGACAAT CAGACCGTGT GCTATGACAT GATGTATGGT
GCCAAACCGA CAGTCTTTAA TGAGTGGGCC CGGTCTTTAG GTGCCAAAAT CTGTATCGAT
GGCTTGGGTA TGTTGGTTGG CCAGGCTGCA GAAAGCTTTT ATTTGTGGCG CAGGGTAAGA
CCCAATGCAG CGCCCGTGCT GCAAACCCTG CGGCAGAGTC TTATTTCAGG AGTGTGA
|
|---|
| Protein sequence | MICLSMTDRF AVFGNPISHS KSPQIHAMFA KETGQTLTYE AILAPLDGFA EAVTAFMAAG
GCGANVTVPF KEQAFTLCDE LSDDARIAGA VNTLIKLPDG RLRGDNTDGM GLVADLIRHG
VELNNKRVLL VGAGGAARGA LLPLVRAGAK LTISNRTLSK AEALAALCPK VNVEVISGSH
IRSPFDVIIN STSASLSGDL PVIAANAIDN QTVCYDMMYG AKPTVFNEWA RSLGAKICID
GLGMLVGQAA ESFYLWRRVR PNAAPVLQTL RQSLISGV
|
|---|
| |