| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0048 |
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| Symbol | |
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| ID | 4602305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 51290 |
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| End bp | 51853 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779357 |
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| Product | topoisomerase DNA-binding C4 zinc finger domain-containing protein |
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| Protein accession | YP_925930 |
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| Protein GI | 119773190 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.256643 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCAAGA TAGATCACAG CCTGTTCAGT GCCCACGAGC ACGCCCTGGA GCGAGAGTTT
GAGCTCTGCC CCGAGTGTGG CAGCGAGCTG TCGGTGCGTC ACAGCAAACA TGGCAGTTTT
GTTGGCTGCA ACAACTACCC CAATTGCCAA TACACCCGTC CGTTGGTACA GCATGAATCC
ATTGAAACTC AGGTGATTGA AGGTTCCGTT TGTCCTGAAT GTGGTCACGA ACTTGCGGTT
AAATCCGGCC GGTTCGGTAT TTTTATCGGT TGTACTCAAT ACCCAGAGTG TCATCACATC
GAGAAGCCTG ATCAGGCGGC GCCGGAAGAA GCGGTTGCCT GCCCGGTGTG CCAAACCGGT
GTGATGGATC ACAGAACCAA TCGCTATGGT AAAGGTTTTT ACGCGTGTTC CTGTTATCCC
AAATGCAAGT TTTTGGTGAA CTATCCGCCG GTGGCTGAGG CCTGCCCTGA TTGTGGATTT
GGTCTCTTGG TGCAGCGTAA AGGTGCTGGC GGTACGCGGC TCGAATGCCC TAATAAACCG
TGCAAATACA AACGGCCTCT TTGA
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| Protein sequence | MSKIDHSLFS AHEHALEREF ELCPECGSEL SVRHSKHGSF VGCNNYPNCQ YTRPLVQHES
IETQVIEGSV CPECGHELAV KSGRFGIFIG CTQYPECHHI EKPDQAAPEE AVACPVCQTG
VMDHRTNRYG KGFYACSCYP KCKFLVNYPP VAEACPDCGF GLLVQRKGAG GTRLECPNKP
CKYKRPL
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