| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0043 |
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| Symbol | def |
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| ID | 4602300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 47066 |
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| End bp | 47569 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639779352 |
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| Product | peptide deformylase |
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| Protein accession | YP_925925 |
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| Protein GI | 119773185 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.598782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.134681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTCTAT TAAAAGTTTT ACGTTTTCCA GACGAAAGAT TAAGGACAGT TGCCAAGCCG
GTGACGGAAT TTACACCCGC TCTGCAATCT CAAATCGACG ACATGTTTGA AACCATGTAC
GAAGAAAATG GCATTGGCCT GGCCGCAACT CAGGTCGATT TCCATCAACG CCTGATTGTG
ATGGATCTGC AAGATGAAGT TGAGCGACCC AAGGTGTTCA TTAACCCTGA GATTGTGGCC
AAGAGCGGTG ACTTCTGTAA CGAGGAAGGC TGCCTGTCGG TGCCTGGCGT CTACGCTAAG
GTTGATCGCG CCGAGTTAAT TACAGTTAAG GCGCTTGACC GTAATGGCAA TGAATTTACG
GTAGAGGCCG ACGGCCTGTT CGCCATTTGC CTGCAACATG AGATGGACCA TCTCGTCGGC
AAGCTCTTTG TTGACTATCT TTCTCCCCTG AAGCGTCAGC GTATTCGCCA AAAGCTGGAA
AAAGCCGCCC GTAACGACAA ATAA
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| Protein sequence | MPLLKVLRFP DERLRTVAKP VTEFTPALQS QIDDMFETMY EENGIGLAAT QVDFHQRLIV
MDLQDEVERP KVFINPEIVA KSGDFCNEEG CLSVPGVYAK VDRAELITVK ALDRNGNEFT
VEADGLFAIC LQHEMDHLVG KLFVDYLSPL KRQRIRQKLE KAARNDK
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