Gene Sama_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0038 
Symbol 
ID4602295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp41376 
End bp41927 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content52% 
IMG OID639779347 
Productprotoporphyrinogen oxidase 
Protein accessionYP_925920 
Protein GI119773180 
COG category[H] Coenzyme transport and metabolism
[C] Energy production and conversion 
COG ID[COG4635] Flavodoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.142009 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACAGA CTCAGCAGCG TCAACATTTG CTTATTTATT TCTCCCGCGG TGGTCACACC 
CGAAAGATTT CTGAGGCAAT TGCGGCCCGA TTAAAGGCAT GTGGGCATGG TTGTACTTTA
ATGTCGGTAA GCGATGCACT GCAAAATCCG CCGGATTGGG AAGCGTTTGA CGTGGTCGCG
CTGGGTGCCT GTGTCCTCTA TGGCTCGTAT GACAAGTCAG TATTTGAGTT GGTCGACCGG
TATGGCGGGG TGCTCTCCAG CAAGGTATCC AGTTTTTACT GTGTCAACGT TGTCGCCAGG
AATCCGGAAA AACGTATTCC TGAAAACAAC AAGTATCTGC AGAAGTTTCT GGCCCTGTCG
CCCTGGCAGC CCGGGGATTT GAAAATTATT GCGGGGAAGG TGGATTATCC GGCCTGGCCC
TGGTACGACG CTTTGATGAT CCGTCTTATC ATGAAGATGA CCAATGGCCC GACCGACCCC
AAGGCGGTCA TAGACTACAC AGACTGGCAG GATGTCGACG CCTATGCCGA CCATCTGGCA
ATGCTGAAAT AA
 
Protein sequence
MPQTQQRQHL LIYFSRGGHT RKISEAIAAR LKACGHGCTL MSVSDALQNP PDWEAFDVVA 
LGACVLYGSY DKSVFELVDR YGGVLSSKVS SFYCVNVVAR NPEKRIPENN KYLQKFLALS
PWQPGDLKII AGKVDYPAWP WYDALMIRLI MKMTNGPTDP KAVIDYTDWQ DVDAYADHLA
MLK