Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0035 |
Symbol | |
ID | 4602292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 38875 |
End bp | 40332 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639779344 |
Product | TrkH family potassium uptake protein |
Protein accession | YP_925917 |
Protein GI | 119773177 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.161257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.16596 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATACA GAACAATAAT AAGGATCACC GGCCTGTTGA TGGGGTTGTT TTCCATCACC ATGTTGCCAC CGGCGCTGGT CGCTATCTAT TACAAAGATG GCGGCGGTAC TGCATTTATT CAGGCCTTTG TGGTGAGTCT GATCCTGGGC TTTATTTTTT GGTATCCCAA TCGCAAGCAT AAGTCGGAGC TGCGCACCCG CGAAGGCTTC CTGATTGTGG TGCTGTTCTG GACGGTTCTG GGGTCTATCG GTGCTTTGCC ATTTATTTTC TCATCCACAC CGGATTTAAG CTGGACCGAT TCCTTCTTTG AGTCTTTTTC GGCGCTCACC ACCACGGGAG CGACCGTGAT TGTGGGGCTC GACAGCCTGC CCAAGGCAAT TCTGTTCTAC AGGCACTTGC TGCAGTGGTT GGGGGGGATG GGGATCATCG TGCTCGCGGT AGCCATCTTA CCCGTGCTTG GTATCGGTGG CATGCAGTTG TACCGCGCCG AAATTCCCGG TCCGGTCAAA GACAGCAAAA TGACTCCGCG CATCGCCGAG ACCGCCAAGG CGCTTTGGTA CATTTACCTG CTACTTACCA TTGCCTGTGC CACAGCCTAC TGGGCCGCGG GCATGTCAGT ATTTGATGCG ATTTGCCACT CGTTCTCCAC CATTGCCATC GGTGGTTTCT CTACCCACGA TGCCAGTATG GGGTATTTCG ATAGTCCGAC CATCAATATG ATTTGTGTCG TATTTTTGAT TATTGCCGCA GTGAATTTCA GTGTGCACTT TGCCGCCATG AGCCGCAGGG GCATCAACCT CAGGGTGTAT TTCCGTGACA CCGAATTCAA GATTCTGGTC GCGATTCAGC TGCTATTAAC CGCCATCTGT TTTGCGACGC TCTACCATTC AGGAATTTAC GACTCGCCGG AAGAAACCTT CGATTACGCG CTGTTTCAGG CGGTGTCTAT TTCCACGACT GCAGGTTTCG GCACCGAGAG TTTCCACCTA TGGCCGCTGT TTTTGCCCAT GTTGCTGATT TTTTCAAGCT TTATTGGTGG CTGTGGTGGC TCTACCGCAG GGGGGATCAA GGTTATTCGG GTCGTACTTC TGCTGCTGCA GGGAAGTCGG GAACTGAAAC GCCTTATCCA CCCCAGAGCC ATGTTTTCTA TCCGCATCGG CAAAACCGCG CTGCCGGATC GGGTCGTGGA CGCTGTGTGG GGTTTTTTCT CGGCGTACGC CCTGGTATTC GTTATCTGTA TGCTGATATT GATGGCCATG GGGCTGGATG ACATTACCGC CTTCAGTGCC ACGGCTGCCT GTCTGAATAA CCTTGGCCCG GGTCTGGGTG AAGTGGCCAG CAACTATGCC AGTATAGGTG ATGGCGCCAA GTGGGTACTG GTCGTGGCCA TGTTGTTTGG GCGGCTCGAA ATCTTTACCC TGTTGGTGCT TTTTACCCCC ACTTTCTGGA GAACCTGA
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Protein sequence | MQYRTIIRIT GLLMGLFSIT MLPPALVAIY YKDGGGTAFI QAFVVSLILG FIFWYPNRKH KSELRTREGF LIVVLFWTVL GSIGALPFIF SSTPDLSWTD SFFESFSALT TTGATVIVGL DSLPKAILFY RHLLQWLGGM GIIVLAVAIL PVLGIGGMQL YRAEIPGPVK DSKMTPRIAE TAKALWYIYL LLTIACATAY WAAGMSVFDA ICHSFSTIAI GGFSTHDASM GYFDSPTINM ICVVFLIIAA VNFSVHFAAM SRRGINLRVY FRDTEFKILV AIQLLLTAIC FATLYHSGIY DSPEETFDYA LFQAVSISTT AGFGTESFHL WPLFLPMLLI FSSFIGGCGG STAGGIKVIR VVLLLLQGSR ELKRLIHPRA MFSIRIGKTA LPDRVVDAVW GFFSAYALVF VICMLILMAM GLDDITAFSA TAACLNNLGP GLGEVASNYA SIGDGAKWVL VVAMLFGRLE IFTLLVLFTP TFWRT
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