Gene Sama_0031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0031 
SymbolfadA 
ID4602288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp33194 
End bp34357 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content56% 
IMG OID639779340 
Product3-ketoacyl-CoA thiolase 
Protein accessionYP_925913 
Protein GI119773173 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR02445] fatty oxidation complex, beta subunit FadA
[TIGR01930] acetyl-CoA acetyltransferases 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.871061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0355813 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAG CCGTTATCGT AGATTGCATC CGCACTCCCA TGGGCCGTTC CAAGGGTGGT 
GTATTCCGTA ATGTTCGCGC CGAGACACTG TCTGCCGAGT TGATGAAAGC CCTGTTGCTG
CGTAACCCCG GCGTTGACCC AAACACCATT GAAGATGTGA TTTGGGGCTG TGTTCAGCAA
ACGCTGGAGC AAGGCTTTAA CATAGCCCGC AACGCTTCAC TGCTGGCTGG AGTGCCTAAA
ACTGCCGGTG CTGTGACAGT TAACCGCCTC TGTGGTTCTT CCATGGAAGC CCTGCATCAG
GCTTCCCGTG CCATCATGAC AGGTATGGGT GACACCTTTA TCATCGGTGG TGTCGAGCAC
ATGGGTCATG TACCTATGAA CCACGGTGTG GACTTCCACC CTGGCCTCGC TGCCAATGTA
GCCAAGGCCT CAGGTATGAT GGGCCTGACT GCCGAAATGC TGGGTAAGCT GCACGGTATC
AGCCGTGAAA TGCAGGACCA GTTTGCTGTG CGCTCACATC AGCGCGCCCA TGCTGCATCC
ATTGAAGGCC GCTTCGCTAA CGAGATATAT GCCATTGAAG GCCACGATGC CAACGGCGCC
CTTATCAAGG TGGATTACGA CGAAGTTATC CGTCCGGAAA CTACGCTTGA ATCTCTGGCT
GGTCTGCGCC CTGTATTCGA TCCTGCCAAT GGAACCGTGA CCGCAGGTAC GTCTTCAGCC
CTGTCGGACG GCGCCGCAGC CATGTTGGTG ATGGAAGAAG AAAAAGCCCG CGCCTTGGGT
CTGACGATTC GAGCCCGGGT TCGCTCCATG GCCGTAGCCG GTTGTGACGC CGCTATCATG
GGTTATGGCC CAGTGCCCGC AACCCAGAAA GCACTGGCTC GTGCCGGTCT CAGCATTCAG
GACATGGATG TGATTGAGCT GAACGAAGCC TTTGCCGCCC AATCTCTGCC ATGCGTGAAA
GACTTGGGGC TAATGGATGT GGTGGAAGAC AAGGTGAACC TCAATGGTGG TGCAATTGCA
TTGGGTCACC CTCTGGGCTG CTCCGGAGCC CGTATCTCCA CCACCCTGAT CAACCTGATG
GAACACAAGG ACGCCACTCT GGGCCTGGCA ACTATGTGTA TCGGTTTGGG TCAAGGCATA
GCCACTGTGT TTGAACGTGT TTAA
 
Protein sequence
MKQAVIVDCI RTPMGRSKGG VFRNVRAETL SAELMKALLL RNPGVDPNTI EDVIWGCVQQ 
TLEQGFNIAR NASLLAGVPK TAGAVTVNRL CGSSMEALHQ ASRAIMTGMG DTFIIGGVEH
MGHVPMNHGV DFHPGLAANV AKASGMMGLT AEMLGKLHGI SREMQDQFAV RSHQRAHAAS
IEGRFANEIY AIEGHDANGA LIKVDYDEVI RPETTLESLA GLRPVFDPAN GTVTAGTSSA
LSDGAAAMLV MEEEKARALG LTIRARVRSM AVAGCDAAIM GYGPVPATQK ALARAGLSIQ
DMDVIELNEA FAAQSLPCVK DLGLMDVVED KVNLNGGAIA LGHPLGCSGA RISTTLINLM
EHKDATLGLA TMCIGLGQGI ATVFERV