Gene Sama_0018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0018 
Symbol 
ID4602275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp17393 
End bp18046 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content60% 
IMG OID639779327 
Productpyroglutamyl-peptidase I 
Protein accessionYP_925900 
Protein GI119773160 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2039] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 
TIGRFAM ID[TIGR00504] pyroglutamyl-peptidase I 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00266687 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACCCG TGCCACTGAT TTTGCTCACC GGATTTGAAC CCTTCGGCGG CGAGGTAATT 
AACCCATCCT GGGAGGCGGT AAAAAACCTC GATGGCGAGC TTATCTGCCG CCACAGGATC
AAAGCCATCA AGCTGCCCTG CGTGTTCCAC GATTCGCTCA CTCAGCTAAC CGAGGCCATC
GATTATCACC AGCCGGCCCT GGTGCTCTGT GTTGGCCAGG CAAGCGGACG CAGCGAACTG
ACCCTTGAGC GCATTGGCAT CAATATCGAT GATGCGCGTA TTGCCGATAA CCGTGGCCAG
CAACCCATTG ATGAGCCCGT GATAGCCGGA GGCCCGGCGG CCTACTTCGC CACCCTGCCC
ATCAAGGCCA TGGTGCGCGA CCTGAAGGAA GCGGGGATCC CGGCAGCCGT CTCCAACACC
GCGGGAACCT TTGTTTGCAA CCATGTGCTC TATGGCATGC TGCATCAGCT GAGCCAGACT
CCCGAATGCC GTGGCGGCTT TTTGCATATC CCCCTGGCAC CGGAACAGGC CTCACGCCAA
CCGGGGACCC CATCTATGGC GTTGGAAACC GTTATCCACG GTCTGCGACT GATGCTGGCC
ACCGCTGTCA CCACAGCCAC CGATATCCAC GAGAGCGCCG GAGTCACCCA CTGA
 
Protein sequence
MKPVPLILLT GFEPFGGEVI NPSWEAVKNL DGELICRHRI KAIKLPCVFH DSLTQLTEAI 
DYHQPALVLC VGQASGRSEL TLERIGINID DARIADNRGQ QPIDEPVIAG GPAAYFATLP
IKAMVRDLKE AGIPAAVSNT AGTFVCNHVL YGMLHQLSQT PECRGGFLHI PLAPEQASRQ
PGTPSMALET VIHGLRLMLA TAVTTATDIH ESAGVTH