Gene Sama_0015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0015 
SymbolrecF 
ID4602272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp13296 
End bp14378 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content52% 
IMG OID639779324 
Productrecombination protein F 
Protein accessionYP_925897 
Protein GI119773157 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00214178 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000779425 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCTCA GCCGTCTTTC CATCGACGCA TTTCGCAATA TTGATTCAGC CCAGCTTGCC 
CCAGGCGCCG GGCTGAATCT CATTTATGGC CACAACGGCA GCGGAAAAAC CAGTATCCTC
GAAGCCATTT ACTTTCTGGG TATGGGGCGG TCGTTTAGAA GCCATTTGTC TCAGCGGGTT
ATTCAGAACG ATGCCGACTG CCTGACGCTG TTTGCCGTAG CCGAAGGGCA GGCCGGTGAC
AGTCGTATCG GTCTGCGGCG GCATCGCAGC GGCGACACCG AAGTCAAAAT CGACGGCGAA
AAGGTCAAGA GACTGTCGCA ATTGGCTGAA GCCTTACCTA TCCAGGTGAT TACGCCAGAG
AGCTTTTCGC TGCTGTTTGA GGGGCCATCG GCCAGGCGTC AGTTTATCGA TTGGGGGGCC
TTTCATGCCT CCAAACAGTT CCATCTGGCA TGGATGAATA CACGCAGAAT TTTAAAACAA
AGAAATCAGC TGCTTAGAGA TGGTGCCAGT TACGAACACA TCGCTTTCTG GGACAAGGAA
TTAATTCGCT ATGCCCTTGA AGTCACAGCG ATAAGAAACG ATTATGTAGG CTCGTTAAAT
GGCGTGCTTA AGGGTATAAT CGGGGAGTTT TTACCCGATG TGGATATCCG GGTTTCTTTC
ACCCGCGGCT GGGACAGCAA GACCGACTTT TCCGAGTTGC TCCAGAGCCA GTATGCGCGG
GATTTGGCCA TAGGCCATAC GGTCAGCGGA CCCCATAAGG CAGACCTCAG ATTGCGGGTT
GGTAATTTGC CCGCACAGGA TGCGCTGTCC CGTGGACAAT TGAAGTTATT GGTGTGTGCC
CTGCGCATTG CCCAGGGCAA GTTGCTTAAG CAACAAATCG ATAAACACAG CATCTATTTG
GTGGACGATC TGCCCTCCGA GTTGGATGCC AAGCACAGGC AGCTGTTGCT GAAGGAACTG
ATAGATACGG GGGCGCAATT GTTTGTCACC GCCATCGAAC CTTCAGCCAT TGTGGATTCT
TTGCCAGTGC CCCCCGACAG GATGTTTCAT GTACAGGCCG GCCGGGTAAC ACAGACTAAA
TAA
 
Protein sequence
MSLSRLSIDA FRNIDSAQLA PGAGLNLIYG HNGSGKTSIL EAIYFLGMGR SFRSHLSQRV 
IQNDADCLTL FAVAEGQAGD SRIGLRRHRS GDTEVKIDGE KVKRLSQLAE ALPIQVITPE
SFSLLFEGPS ARRQFIDWGA FHASKQFHLA WMNTRRILKQ RNQLLRDGAS YEHIAFWDKE
LIRYALEVTA IRNDYVGSLN GVLKGIIGEF LPDVDIRVSF TRGWDSKTDF SELLQSQYAR
DLAIGHTVSG PHKADLRLRV GNLPAQDALS RGQLKLLVCA LRIAQGKLLK QQIDKHSIYL
VDDLPSELDA KHRQLLLKEL IDTGAQLFVT AIEPSAIVDS LPVPPDRMFH VQAGRVTQTK