Gene Sama_0009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0009 
Symbol 
ID4602266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp7951 
End bp9576 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content54% 
IMG OID639779318 
Productinner membrane protein, 60 kDa 
Protein accessionYP_925891 
Protein GI119773151 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.42032e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000799802 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAATCAC AACGCAATCT ATTGCTCATC GGCCTGCTGT TTGTCAGCTT TTTGCTTTGG 
CAACAGTGGG AATCCGACAA GGCGCCCAAG CCAGCCACAG AAGTAACTGC GGCGGCCCAA
ATCCACGACC AGGCTATCAA CAGTGACGTT CCAACAGCCG ATGCCGGTGT ACCTGCCACA
GTGGCAGCAA CCCAAAACCT GATCCTCGTT ACCACAGATC AACTGGAAAT CCAGATTAAT
CCTGTGGGCG GTGACATAGT GCATGCCGCC CTGCTGACCC ATAAGCTGGA ACAAAACGAA
GAAGCACCTT TTGTTCTGCT GGAGCAGAAA AACAACTTCT CCTACATCGC CCAGAGTGGT
CTGATTGGTC GTGATGGTAT CGACAGCGCC GCCAGTGGCC GCGCCAAGTT CGCTGCCGCC
GCCGACGCCT ACACCCTGGC TGACGGCCAG GACACCCTGG AAGTGCCACT GACTCTGACC
ACAGATGCCG GTGTAACCTT CACCAAGGTG TTCGTGTTCA AGCGTGGTCA GTTTGATGTG
GGCGTGGATT ACCGCGTTGC CAACAACTCT GCAGCCCCTG TACAGGTGCA GATGTATGGC
CAAATCAAGC AAACCATCAC TGCCAGCGAA AGCAGCATGA TGATGCCCAC CTACCGTGGC
GCCGCCTTCT CAACCGCCGA TGTGCGTTAT GAGAAGTACA GCTTCGATGA CATGGGTAAA
AAAGACCTCG AAGAGCCGAC TCTGGGTGGT TGGGTTGCCA TGCTGCAACA CTACTTCGTG
TCTGCCTGGG TTCCCGCTGC AGCTGACAAG AACACCCTGT TCACCTCTGT CAGTGCCGGT
GGTCTGGCCA ATATCGGCTT CAAGGGCTCG GTTCATGACG TAGCACCCGG TGCCACAGAA
ACCATTTCCG CCACCTTCTA CGTTGGTCCA AAAGATCAGG CTGCTCTGTC TGCTTTGTCT
GACACCCTGA ACCTGGTAGT GGATTACGGT TTCCTCTGGT GGCTGGCTGT ACCAATCCAC
TGGATCCTGA TGTTCTTCCA AAGCCTGGTG CACAACTGGG GTGTGGCCAT CATTCTGGTG
ACCCTGACTG TTCGTGGTCT CTTGTATCCA CTGACCAAGG CACAGTATGT GTCCATGGCC
AAGATGCGTA ACCTGCAGCC TAAATTGCAG GACCTGAAAG ACCGCTTTGG TGATGACCGT
CAGAAGATGG GTCAGGCCAT GATGGAGCTG TACAAGAAGG AAAAGGTTAA CCCCATGGGC
GGCTGTCTGC CCATCCTGCT GCAGATGCCA ATCTTCATCG CCCTGTACTG GGTGCTGCTG
GAAAGCGTTG AACTGCGCCA CGCGCCATTT ATGCTGTGGA TCCAGGATTT GTCAGTGCAG
GACCCTTACT ACGTACTGCC GCTGCTGATG GGCGCTTCCA TGTGGGCGAT GCAAAAGATG
CAGCCAATGG CCCCCAACAT GGACCCGATG CAACAAAAAA TGCTGCAGTG GATGCCGATG
ATCTTCACCG TATTCTTCCT GTGGTTCCCA GCAGGTCTGG TACTCTACTG GCTGGTGGGT
AACCTGGTTG CCATCACCCA GCAGAAGATT ATTTATGCCT CACTGGAGAA AAAAGGCTTA
AAATAA
 
Protein sequence
MESQRNLLLI GLLFVSFLLW QQWESDKAPK PATEVTAAAQ IHDQAINSDV PTADAGVPAT 
VAATQNLILV TTDQLEIQIN PVGGDIVHAA LLTHKLEQNE EAPFVLLEQK NNFSYIAQSG
LIGRDGIDSA ASGRAKFAAA ADAYTLADGQ DTLEVPLTLT TDAGVTFTKV FVFKRGQFDV
GVDYRVANNS AAPVQVQMYG QIKQTITASE SSMMMPTYRG AAFSTADVRY EKYSFDDMGK
KDLEEPTLGG WVAMLQHYFV SAWVPAAADK NTLFTSVSAG GLANIGFKGS VHDVAPGATE
TISATFYVGP KDQAALSALS DTLNLVVDYG FLWWLAVPIH WILMFFQSLV HNWGVAIILV
TLTVRGLLYP LTKAQYVSMA KMRNLQPKLQ DLKDRFGDDR QKMGQAMMEL YKKEKVNPMG
GCLPILLQMP IFIALYWVLL ESVELRHAPF MLWIQDLSVQ DPYYVLPLLM GASMWAMQKM
QPMAPNMDPM QQKMLQWMPM IFTVFFLWFP AGLVLYWLVG NLVAITQQKI IYASLEKKGL
K